FC920493

Overview
NameFC920493
Unique NameFC920493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920493_ssr39 microsatellite FC920493_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14100 contig Ccv1_Contig14100:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        + P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLG 146
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 48/142 (33.80%), Postives = 62/142 (43.66%), Query Frame = 3 
Query:  282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            +WYGPDR  +L       +  P YLTGE PG+                                      YG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGD--------------------------------------YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLG 138
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 50/141 (35.46%), Postives = 63/141 (44.68%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        +IP YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLG 147
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/141 (35.46%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
The following BLAST results are available for this feature:
BLAST of FC920493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CB21_SILPR8.148e-1535.46Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLMO1.064e-1433.80Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC1.064e-1435.46Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PETSP1.064e-1435.46Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA1.064e-1435.46Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2G_SOLLC1.390e-1435.46Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC1.390e-1435.46Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL1.390e-1435.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC1.390e-1435.46Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL1.390e-1435.46Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC32009B04EF RVDevelop1 Citrus clementina cDNA clone C32009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920493 ID=FC920493; Name=FC920493; organism=Citrus clementina; type=EST; length=744bp
ACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGC
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCT
TCAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTT
AAAACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTA
CTTCGGAAAGAACATCCCAATCAACCCTTGTTTTGCTGTCATTG
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