FC920493

Overview
NameFC920493
Unique NameFC920493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920493_ssr39 microsatellite FC920493_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14100 contig Ccv1_Contig14100:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 48/141 (34.04%), Postives = 62/141 (43.97%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYG DR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 48/141 (34.04%), Postives = 62/141 (43.97%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYG DR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 46/141 (32.62%), Postives = 61/141 (43.26%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L       ++ P YL GE PG+                                      YG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGD--------------------------------------YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLG 149          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 48/141 (34.04%), Postives = 61/141 (43.26%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYG DR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 42/123 (34.15%), Postives = 55/123 (44.72%), Query Frame = 3
Query:  339 EIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:    5 EPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 88          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 3
Query:  492 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            YG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G
Sbjct:   84 YGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLG 156          
The following BLAST results are available for this feature:
BLAST of FC920493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CB22_ARATH1.537e-1334.04Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.537e-1334.04Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_HORVU3.423e-1332.62Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL3.423e-1334.04Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_CUCSA1.101e-1134.15Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA2.453e-1145.21Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC32009B04EF RVDevelop1 Citrus clementina cDNA clone C32009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920493 ID=FC920493; Name=FC920493; organism=Citrus clementina; type=EST; length=744bp
ACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGC
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCT
TCAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTT
AAAACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTA
CTTCGGAAAGAACATCCCAATCAACCCTTGTTTTGCTGTCATTG
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