FC920880

Overview
NameFC920880
Unique NameFC920880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14792 contig Ccv1_Contig14792:54..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC1_XENLA (V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 71/200 (35.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            + +W++S P + +    W +L    +K++  +   +FNIP+L+VGT            K ++FVE    K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+L+TLL VVPK +  DW+  Y
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGAVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYTDWMKEY 201          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_DICDI (V-type proton ATPase subunit C OS=Dictyostelium discoideum GN=vatC PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 68/196 (34.69%), Postives = 119/196 (60.71%), Query Frame = 1
Query:   79 YWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASY 666
            +W++S P     A +++++ ++ +K +  +   +FN P LRVGT            K ++ VES + KI RQ+ +L      +  SLS++G  +  YL +F WD+AKY     L+EIV+ I + V+KI+DDLK++ +EY+ + S + +  RK SG+L VR L++L+  ++I+ +++  T   V+PK S+K++LA Y
Sbjct:    7 FWLISAP-NLPGADIFDQVNQKTAKENSLSENKKFNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLKLSLQEIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKASGNLQVRTLNDLITADNIVQTDYFTTAFVVIPKQSEKEFLACY 201          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_MANSE (V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            S YW++S P   +    W  L +    ++     Y+F IP+L+VGT            K ++FVE V+ K+ + + E LE        +L+ +   +  YLTRF WD AKYP    LR I D I   V +I+ DLKV+ + YN ++  L  + +KQ+GSL  R+L++LVK E  I+ SE+L TLL +VPK    DW A+Y
Sbjct:    2 SEYWLISAPGDKTCQQTWEALNQATKANNLSLN-YKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLTANNDDLPHYLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLQNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANY 200          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VTC1B_DANRE (V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 68/200 (34.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            + +W++S P   +    W+++    ++ +  +   +FNIP L+VGT            K ++FVESV  KI + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + +   V +I++DLK R + YN+++  L ++ RK  GSL  R L+++VK ED ++ SE+L TLL +V K +  +W  +Y
Sbjct:    2 TEFWLISAPGDKTCQQTWDKMNMATAESNNLSTNNKFNIPELKVGTLDVLVGLSDELAKLDTFVESVVKKIAQYMTDVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKSISEIMSKQVTQIDNDLKARASAYNSLKGSLQSLERKNVGSLLTRSLADIVKKEDFVLDSEYLTTLLVIVSKTNYPEWQKTY 201          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC2_HUMAN (V-type proton ATPase subunit C 2 OS=Homo sapiens GN=ATP6V1C2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 70/202 (34.65%), Postives = 109/202 (53.96%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKH--SFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            S +W++S P          R+    SK   S++T   +F IP+ +VGT            K ++F ES+  ++ + + E +E   G     L  +GV + +++T F WD AKYP   PL  +VD I   +A+IE DLK R A YN +++ L  + +K  G+L  R LS++V  ED ++ SE+LVTLL +VPK +   W  +Y
Sbjct:    2 SEFWLISAPGDKENLQALERMNTVTSKSNLSYNT---KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVSVVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSEYLVTLLVIVPKPNYSQWQKTY 200          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_CAEEL (V-type proton ATPase subunit C OS=Caenorhabditis elegans GN=vha-11 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 65/201 (32.34%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   70 ASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            +  YW++S+P +  A   W++L       S ++   ++ IP+L+VGT            K ++  E+V  K+ +   E LE      + +L +    + TY+T+F W+ AKYP    L+ + + I   +++I++DLKV+   YNN+++ L +++RK  GSL  +DL++LVK +D ++ SE+L T++ VVPK S K+W   Y
Sbjct:    6 SGEYWLISVPGEKGANDAWDKLNRSTGNTSTNS---KYLIPDLKVGTLDQLVGLSDDLSKLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSEIIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQKY 203          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_CAEBR (V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   70 ASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            +  YW++S+P +  A   W++L       S ++   ++ IP+L+VGT            K ++  E V  K+ +   E LE      + +L +    + TY+T+F W+ AKYP    L+ + + I   + +I++DLK++   YNN+++ L +++RK +GSL  +DL++LVK ED ++ SE+L T++ VVPK   K+W   Y
Sbjct:    7 SGEYWLISVPGEKGANDAWDKLNRATGNISTNS---KYLIPDLKVGTLDQLVGLSDDLSKLDTSAEGVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSEIIGKQITQIDNDLKMKSLAYNNLKNALASMDRKTTGSLLTKDLADLVKAEDFVLNSEYLQTIIVVVPKILVKEWETKY 204          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC2_RAT (V-type proton ATPase subunit C 2 OS=Rattus norvegicus GN=Atp6v1c2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            S +W++S P          R+    SK +      +F IP+ +VGT            K ++F ES+  ++ + + E +E   G    +L  +GV + +++T F WD AKYP   PL  +VD +   +A+IE DLK R A Y+ +++ L  + +K +G+L  R LS++V  ED ++ SE+L+TLL +VPK S   W  +Y
Sbjct:    2 SEFWLISAPGDKENLQALERMNSVTSKSNLSHNT-KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKRMAQSVVEVMEDSKGKVHENLLANGVDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQIETDLKSRTAAYSVLKANLENLEKKSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSYVQWQKTY 200          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC2_MOUSE (V-type proton ATPase subunit C 2 OS=Mus musculus GN=Atp6v1c2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25
Identity = 65/200 (32.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            S +W++S P          R+    SK +      +F IP+ +VGT            K ++F ES+  ++ + + E +E   G    +L  +GV + +++T F WD AKYP   PL  +VD +   +A+IE DLK R A Y+ +++ L  + ++ +G+L  R LS++V  ED ++ SE+L+TLL +VPK S   W  +Y
Sbjct:    2 SEFWLISAPGDKENLQALERMNNVTSKSNLSHNT-KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKRMAQSVVEVMEDSKGKAHETLLANGVDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQIETDLKSRTAAYSVLKANLENLEKRSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSFAQWQKTY 200          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_ASCSS (V-type proton ATPase subunit C 2 OS=Ascidia sydneiensis samea GN=VATC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 65/201 (32.34%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   73 SRYWVVSLPVQNSAASVWNRLQEQISKHSFD-TPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIIT-SEHLVTLLAVVPKYSQKDWLASY 666
            S +WV+S P   +    + RLQ+       + +  Y+F+IP L+VGT            K ++F E V  K+   + E LE      SS+LS     +  ++ RF W+ AKYPT  P++ + + +  +V +++ DL+ +   YNN++S L  + RK +GSL +R+LS +VK +D I  SE+L T++  VP     +W  +Y
Sbjct:    2 SEFWVISAPGDKTPQQTYERLQKATMGSGQNLSNCYKFSIPELKVGTLDSLIGLTDDLGKLDTFCEGVCRKVASYMGEVLEDQKDKLSSNLSAGEGTLVNFMHRFQWNMAKYPTKQPIKSLTEILSKVVTQVDTDLRSKSQAYNNLKSSLQNMERKATGSLLLRNLSQIVKKDDFIDGSEYLRTVIVAVPVALFGEWEKNY 202          
The following BLAST results are available for this feature:
BLAST of FC920880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATC1_XENLA3.913e-3135.50V-type proton ATPase subunit C 1 OS=Xenopus laevis... [more]
VATC_DICDI4.326e-3034.69V-type proton ATPase subunit C OS=Dictyostelium di... [more]
VATC_MANSE2.804e-2937.50V-type proton ATPase subunit C OS=Manduca sexta PE... [more]
VTC1B_DANRE1.392e-2834.00V-type proton ATPase subunit C 1-B OS=Danio rerio ... [more]
VATC2_HUMAN2.902e-2634.65V-type proton ATPase subunit C 2 OS=Homo sapiens G... [more]
VATC_CAEEL3.790e-2632.34V-type proton ATPase subunit C OS=Caenorhabditis e... [more]
VATC_CAEBR1.440e-2531.84V-type proton ATPase subunit C OS=Caenorhabditis b... [more]
VATC2_RAT1.440e-2533.00V-type proton ATPase subunit C 2 OS=Rattus norvegi... [more]
VATC2_MOUSE3.208e-2532.50V-type proton ATPase subunit C 2 OS=Mus musculus G... [more]
VATC_ASCSS1.761e-2332.34V-type proton ATPase subunit C 2 OS=Ascidia sydnei... [more]

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Properties
Property NameValue
Genbank descriptionC32014C02EF RVDevelop1 Citrus clementina cDNA clone C32014C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920880 ID=FC920880; Name=FC920880; organism=Citrus clementina; type=EST; length=666bp
GGGTGAAACAACTCGCTCCATTATTAACGGACACTCAGAGCGAAAGTGAG
AGTGAAAGTGATCGTGATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAG
TACAAAATTCAGCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCT
AAACATTCATTTGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCG
TGTTGGAACCCTAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGT
CAAATAGCTTTGTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAG
GAACTGGAGAGGGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGG
AGTACCAGTTGATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGT
ACCCAACTATGTCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTT
GTGGCAAAGATTGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAA
TGTCCGCAGTCAGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAG
CTGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCA
GAACATCTTGTAACCCTTCTTGCTGTTGTCCCCAAGTACTCCCAGAAGGA
TTGGTTGGCTAGCTAT
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