FC920880

Overview
NameFC920880
Unique NameFC920880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14792 contig Ccv1_Contig14792:54..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  367 YLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            YLTRF WD AKYP    LR I D I   + +I+ DLK +   YNN++  L  + +K++GSL  R+L++LVK E  I+ SE+L TLL +VPK    DWL +Y
Sbjct:  550 YLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNY 650          
BLAST of FC920880 vs. ExPASy Swiss-Prot
Match: VATC_YEAST (V-type proton ATPase subunit C OS=Saccharomyces cerevisiae GN=VMA5 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  181 FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASY 666
            F IP  ++G+            K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     +++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++ SEHL T+L  VPK  + D+  SY
Sbjct:   48 FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSY 210          
The following BLAST results are available for this feature:
BLAST of FC920880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATC_DROME1.181e-1947.52V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC_YEAST3.216e-1729.45V-type proton ATPase subunit C OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionC32014C02EF RVDevelop1 Citrus clementina cDNA clone C32014C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920880 ID=FC920880; Name=FC920880; organism=Citrus clementina; type=EST; length=666bp
GGGTGAAACAACTCGCTCCATTATTAACGGACACTCAGAGCGAAAGTGAG
AGTGAAAGTGATCGTGATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAG
TACAAAATTCAGCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCT
AAACATTCATTTGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCG
TGTTGGAACCCTAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGT
CAAATAGCTTTGTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAG
GAACTGGAGAGGGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGG
AGTACCAGTTGATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGT
ACCCAACTATGTCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTT
GTGGCAAAGATTGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAA
TGTCCGCAGTCAGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAG
CTGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCA
GAACATCTTGTAACCCTTCTTGCTGTTGTCCCCAAGTACTCCCAGAAGGA
TTGGTTGGCTAGCTAT
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