FC921302

Overview
NameFC921302
Unique NameFC921302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.359e-99
Identity = 174/198 (87.88%), Postives = 190/198 (95.96%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            MLELRLVQG LLKKVLE+IK+LVNDANFDCSA+GFSLQAMDSSHVALVA+LLRSEGFEHYRCDRNISMGMNL N++KML+CAGNDDI+T+KADD  D +TFMFESPTQDKI+DFEMKLMDIDSEHLGIPE+EY AIVRMPSAEFARICKDL++IGDTVVISVTKEGVKFSTRGDIGTANIV RQNT+VDKPE+AT IE
Sbjct:    1 MLELRLVQGGLLKKVLESIKDLVNDANFDCSASGFSLQAMDSSHVALVAVLLRSEGFEHYRCDRNISMGMNLGNMAKMLRCAGNDDIVTMKADDDGDVITFMFESPTQDKISDFEMKLMDIDSEHLGIPESEYEAIVRMPSAEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTSVDKPEDATIIE 198

HSP 2 Score: 30.4166 bits (67), Expect = 1.359e-99
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMNS 703
            M E VSLTFALRYMNS
Sbjct:  199 MQETVSLTFALRYMNS 214
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_SOYBN (Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.973e-89
Identity = 156/168 (92.86%), Postives = 166/168 (98.81%), Query Frame = 3 
Query:  153 SATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            S+TGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNN++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIV+MPS+EFARICKDL+SIGDTVVISVTKEGVKFST+GDIGTANIV RQNT+VDKPEEAT IE
Sbjct:    1 SSTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVKMPSSEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVIE 168

HSP 2 Score: 33.8834 bits (76), Expect = 1.973e-89
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMNS 703
            M+EPVSLTFALRYMNS
Sbjct:  169 MNEPVSLTFALRYMNS 184
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_COTJA (Proliferating cell nuclear antigen OS=Coturnix coturnix japonica GN=PCNA PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.798e-73
Identity = 127/198 (64.14%), Postives = 163/198 (82.32%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LK+VLEA+K+L+ +A +D  + G SLQ+MDSSHV+LV L LRSEGF+ YRCDRNI+MG+NLN++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPSAEFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSVLKRVLEALKDLITEACWDLGSGGISLQSMDSSHVSLVQLTLRSEGFDTYRCDRNIAMGVNLNSMSKILKCAGNEDIITLRAEDNADTLALVFETPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSAEFARICRDLSHIGDAVVISCAKDGVKFSANGELGNGNIKLSQTSNVDKEEEAVTIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 4.798e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_CHICK (Proliferating cell nuclear antigen OS=Gallus gallus GN=PCNA PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.798e-73
Identity = 127/198 (64.14%), Postives = 163/198 (82.32%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LK+VLEA+K+L+ +A +D  + G SLQ+MDSSHV+LV L LRSEGF+ YRCDRNI+MG+NLN++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPSAEFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSVLKRVLEALKDLITEACWDLGSGGISLQSMDSSHVSLVQLTLRSEGFDTYRCDRNIAMGVNLNSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSAEFARICRDLSHIGDAVVISCAKDGVKFSANGELGNGNIKLSQTSNVDKEEEAVTIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 4.798e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_MACFA (Proliferating cell nuclear antigen OS=Macaca fascicularis GN=PCNA PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.798e-73
Identity = 126/198 (63.64%), Postives = 164/198 (82.83%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+N+A +D S++G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 4.798e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_HUMAN (Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.798e-73
Identity = 126/198 (63.64%), Postives = 164/198 (82.83%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+N+A +D S++G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 4.798e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_BOVIN (Proliferating cell nuclear antigen OS=Bos taurus GN=PCNA PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.798e-73
Identity = 126/198 (63.64%), Postives = 164/198 (82.83%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+N+A +D S++G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVAIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 4.798e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_CRIGR (Proliferating cell nuclear antigen OS=Cricetulus griseus GN=PCNA PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 1.064e-72
Identity = 126/198 (63.64%), Postives = 163/198 (82.32%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+N+A +D S+ G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSGGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 1.064e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_RAT (Proliferating cell nuclear antigen OS=Rattus norvegicus GN=Pcna PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.388e-72
Identity = 125/198 (63.13%), Postives = 163/198 (82.32%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RL+QGS+LKKVLEA+K+L+N+A +D S+ G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++G  NI L Q + VDK EEA  IE
Sbjct:    1 MFEARLIQGSILKKVLEALKDLINEACWDISSGGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVSIE 198

HSP 2 Score: 29.6462 bits (65), Expect = 1.388e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213
[Close]
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_MOUSE (Proliferating cell nuclear antigen OS=Mus musculus GN=Pcna PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.810e-72
Identity = 125/204 (61.27%), Postives = 163/204 (79.90%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IECMSQCH 674
            M E RL+QGS+LKKVLEA+K+L+N+A +D S+ G +LQ+MDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+  +FE+P Q+K++D+EMKLMD+D E LGIPE EY  +++MPS EFARIC+DL+ IGD VVIS  K GVKFS  G++G  NI L Q + VDK EEA  IE     H
Sbjct:    1 MFEARLIQGSILKKVLEALKDLINEACWDVSSGGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVIKMPSGEFARICRDLSHIGDAVVISCAKNGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVH 204

HSP 2 Score: 29.261 bits (64), Expect = 1.810e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVHLTFALRYLN 213
The following BLAST results are available for this feature:
BLAST of FC921302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PCNA2_DAUCA1.359e-9987.88Proliferating cell nuclear antigen large form OS=D... [more]
PCNA_SOYBN1.973e-8992.86Proliferating cell nuclear antigen (Fragment) OS=G... [more]
PCNA_COTJA4.798e-7364.14Proliferating cell nuclear antigen OS=Coturnix cot... [more]
PCNA_CHICK4.798e-7364.14Proliferating cell nuclear antigen OS=Gallus gallu... [more]
PCNA_MACFA4.798e-7363.64Proliferating cell nuclear antigen OS=Macaca fasci... [more]
PCNA_HUMAN4.798e-7363.64Proliferating cell nuclear antigen OS=Homo sapiens... [more]
PCNA_BOVIN4.798e-7363.64Proliferating cell nuclear antigen OS=Bos taurus G... [more]
PCNA_CRIGR1.064e-7263.64Proliferating cell nuclear antigen OS=Cricetulus g... [more]
PCNA_RAT1.388e-7263.13Proliferating cell nuclear antigen OS=Rattus norve... [more]
PCNA_MOUSE1.810e-7261.27Proliferating cell nuclear antigen OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC32103D08EF RVDevelopN Citrus clementina cDNA clone C32103D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921302 ID=FC921302; Name=FC921302; organism=Citrus clementina; type=EST; length=703bp
GAAGCTTTCCCTTTCTATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGATTTCTGTCAC
AAAGGAGGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACATAA
ATTGAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAAT
TCA
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