FC921302

Overview
NameFC921302
Unique NameFC921302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_SARCR (Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis GN=PCNA PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 5.237e-72
Identity = 121/198 (61.11%), Postives = 162/198 (81.82%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RL+  ++LKK+L+AIKEL+++A F+CS +G  LQAMD+SHV+L +L LRS+GF+ +RCDRNISMGMNL +++K+LKCA NDD +T+KA D +DTVTFMFESP  +K++D+EMKLM++D EHLGIPE +Y  +VRMPS EFARIC+DLA   ++++I  TKEGVKFS  GD+G+AN+ L Q ++VDK EEA  IE
Sbjct:    1 MFEARLINATILKKILDAIKELLHEATFECSESGIQLQAMDNSHVSLGSLTLRSDGFDKFRCDRNISMGMNLGSMAKILKCANNDDTVTVKAQDNADTVTFMFESPNHEKVSDYEMKLMNLDQEHLGIPETDYSCVVRMPSMEFARICRDLAQFSESMLICCTKEGVKFSASGDVGSANVKLAQTSSVDKEEEAVIIE 198          

HSP 2 Score: 28.1054 bits (61), Expect = 5.237e-72
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMNS 703
            M EPV+LTFA RY+N+
Sbjct:  199 MQEPVTLTFACRYLNA 214          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_XENLA (Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.162e-71
Identity = 123/198 (62.12%), Postives = 164/198 (82.83%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+++A +D +++G SLQ+MDSSHV+LV L LRS+GF+ YRCDRN S+G+ ++++SK+LKCA +DDIITL+A+D +DTVT +FESP Q+K++D+EMKLMD+D E LGIPE EY  +++MPS EFARIC+DL+ IGD VVIS  K+GVKFS  G++GT N+ L Q + VDK EEA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLIDEACWDITSSGISLQSMDSSHVSLVQLTLRSDGFDTYRCDRNQSIGVKMSSMSKILKCAASDDIITLRAEDNADTVTMVFESPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVIKMPSGEFARICRDLSQIGDAVVISCAKDGVKFSASGELGTGNVKLSQTSNVDKEEEAVTIE 198          

HSP 2 Score: 29.6462 bits (65), Expect = 1.162e-71
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV LTFALRY+N
Sbjct:  199 MNEPVQLTFALRYLN 213          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_DROME (Proliferating cell nuclear antigen OS=Drosophila melanogaster GN=mus209 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 1.515e-71
Identity = 123/198 (62.12%), Postives = 161/198 (81.31%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RL Q ++LKK+L+AIK+L+N+A FDCS +G  LQAMD+SHV+LV+L LRS+GF+ +RCDRN+SMGMNL +++K+LKCA N+D +T+KA D +DTVT MFES  Q+K++D+EMKLM++D EHLGIPE ++  +VRMP+ EFARIC+DLA   ++VVI  TKEGVKFS  GD+GTANI L Q  +VDK EEA  IE
Sbjct:    1 MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIE 198          

HSP 2 Score: 28.1054 bits (61), Expect = 1.515e-71
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMNS 703
            M EPV+LTFA RY+N+
Sbjct:  199 MQEPVTLTFACRYLNA 214          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_HAPBU (Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.061e-69
Identity = 122/198 (61.62%), Postives = 163/198 (82.32%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+ +A +D S++G SLQ+MDSSHV+LV L LR +GF+ YRCDRN++MG+NL+++SK+LKCAGN+DIITL+A+D +DT+  +FE+  Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD V+IS  K+GVKFS  G++GT NI L Q + VDK +EA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLITEACWDVSSSGISLQSMDSSHVSLVQLTLRHDGFDSYRCDRNLAMGVNLSSMSKILKCAGNEDIITLRAEDNADTLALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIE 198          

HSP 2 Score: 25.409 bits (54), Expect = 1.061e-69
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV L FAL Y+N
Sbjct:  199 MNEPVQLIFALNYLN 213          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_DANRE (Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 1.061e-69
Identity = 122/198 (61.62%), Postives = 163/198 (82.32%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+ +A +D S++G SLQ+MDSSHV+LV L LRS+GF+ YRCDRN++MG+NL+++SK+LKCAGN+DIITL+A+D +D +  +FE+  Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD V+IS  K+GVKFS  G++GT NI L Q + VDK +EA  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLITEACWDVSSSGISLQSMDSSHVSLVQLTLRSDGFDSYRCDRNLAMGVNLSSMSKILKCAGNEDIITLRAEDNADALALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIE 198          

HSP 2 Score: 25.409 bits (54), Expect = 1.061e-69
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV L FAL Y+N
Sbjct:  199 MNEPVQLIFALNYLN 213          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_BOMMO (Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.061e-69
Identity = 123/198 (62.12%), Postives = 158/198 (79.80%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RL++ S+LKKVLEAIK+L+  A FDC   G  LQAMD+SHV+LV+L LR++GF+ YRCDRNISMGMNL ++SK+L  AG+ D  T+KA D +D VTF+FESP Q+K++D+EMKLM++D EHLGIPE EY   +RMPS+EFARIC+DL+  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK EEA  IE
Sbjct:    1 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILIFAGDKDTATIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKEEEAVVIE 198          

HSP 2 Score: 26.1794 bits (56), Expect = 1.061e-69
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMN 700
            M EPV+LTFA +Y+N
Sbjct:  199 MEEPVTLTFACQYLN 213          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_ANGJA (Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 8.872e-69
Identity = 119/198 (60.10%), Postives = 163/198 (82.32%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT*IE 656
            M E RLVQGS+LKKVLEA+K+L+ +A +D S++G SLQ+MDSSHV+LV L LRS+GF+ YRCDRN+++G++LN++SKMLKCAGN+DIITL+A+D +DT+  +FE+  Q+K++D+EMKLMD+D E LGIPE EY  +V+MPS EFARIC+DL+ IGD V+IS  K+GV FS  G++GT N+ L Q + VD+ ++A  IE
Sbjct:    1 MFEARLVQGSILKKVLEALKDLITEACWDVSSSGISLQSMDSSHVSLVQLTLRSDGFDSYRCDRNLALGVSLNSMSKMLKCAGNEDIITLRAEDNADTLALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSQIGDAVMISCAKDGVMFSASGELGTGNVKLSQTSNVDEEDDAVTIE 198          

HSP 2 Score: 25.409 bits (54), Expect = 8.872e-69
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  656 MHEPVSLTFALRYMN 700
            M+EPV L FAL Y+N
Sbjct:  199 MNEPVQLIFALNYLN 213          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_STYCL (Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.165e-64
Identity = 111/193 (57.51%), Postives = 154/193 (79.79%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEE 641
            M E RL+QGS LKKV EA+K++V +A++DC+++G SLQAMDSSHV+LV L LR++GFE++RCDRN++MG+N+ +++K++KCAGNDDIITL+A+D +D +  +FES   DK + +EMKLMD+D E LGIPE +Y   V +PS EF RIC+DL+ IG+ VVI+ TK+GV+FS +GD+G   I L+QNT  D  EE
Sbjct:    1 MFEARLIQGSNLKKVQEALKDIVTEASWDCTSSGISLQAMDSSHVSLVQLTLRADGFENFRCDRNLAMGINMTSMAKIMKCAGNDDIITLRAEDNADMLELIFESSKGDKYSQYEMKLMDLDCEQLGIPEQDYSCCVTLPSQEFGRICRDLSQIGECVVITCTKDGVQFSAKGDLGAGKIKLKQNTGSDIKEE 193          

HSP 2 Score: 25.409 bits (54), Expect = 6.165e-64
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  662 EPVSLTFALRYMN 700
            EPV LTFA++Y+N
Sbjct:  202 EPVQLTFAIKYLN 214          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_SCHPO (Proliferating cell nuclear antigen OS=Schizosaccharomyces pombe GN=pcn1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 110/194 (56.70%), Postives = 155/194 (79.90%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA 644
            MLE R  Q +LLKK+L+AIKELV DANFDC+  G SLQAMDSSHVALV++L++S+GFE YRCDRNI++G+NLN +SK+L+CA N+D++TLKA+D  + +  +FES   D+I+D+++KLMDID EHLGIP+ EY A + MP+AEF RI +DL ++ D+V I+ +KEGV+FS +GDIG  +  L+Q+T +   +++
Sbjct:    1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQS 194          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_DICDI (Proliferating cell nuclear antigen OS=Dictyostelium discoideum GN=pcna PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.597e-61
Identity = 115/200 (57.50%), Postives = 156/200 (78.00%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKA-DDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKP-EEAT*IE 656
            M E RL+Q SLLKK+LE+IK+LV  ANFDCS  G SLQAMD +HV L+ L+LR+EGFE Y CDR++S+G++L ++SK+LKCAGNDD +T++A D+ SDTVTF+FESP  D+++DFE+KL+DI +E   I +++Y A+++MPSAE  RIC+DL+ IG+ V IS  KEGVKFS  GD G+ NI ++  +  D P E+AT IE
Sbjct:    1 MFEARLLQASLLKKILESIKDLVESANFDCSPEGISLQAMDGTHVTLINLVLRNEGFETYNCDRSLSLGLSLVSLSKILKCAGNDDTLTIRARDNESDTVTFVFESPKNDRVSDFEIKLIDIKNEQYSIRKSDYSAVIKMPSAELQRICRDLSIIGEIVTISANKEGVKFSVSGDSGSGNITIKPTSDSDVPAEQATVIE 200          

HSP 2 Score: 20.4014 bits (41), Expect = 3.597e-61
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  662 EPVSLTFALRYMNS 703
            EPV L FAL+++++
Sbjct:  203 EPVVLNFALKFLSN 216          
The following BLAST results are available for this feature:
BLAST of FC921302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PCNA_SARCR5.237e-7261.11Proliferating cell nuclear antigen OS=Sarcophaga c... [more]
PCNA_XENLA1.162e-7162.12Proliferating cell nuclear antigen OS=Xenopus laev... [more]
PCNA_DROME1.515e-7162.12Proliferating cell nuclear antigen OS=Drosophila m... [more]
PCNA_HAPBU1.061e-6961.62Proliferating cell nuclear antigen OS=Haplochromis... [more]
PCNA_DANRE1.061e-6961.62Proliferating cell nuclear antigen OS=Danio rerio ... [more]
PCNA_BOMMO1.061e-6962.12Proliferating cell nuclear antigen OS=Bombyx mori ... [more]
PCNA_ANGJA8.872e-6960.10Proliferating cell nuclear antigen OS=Anguilla jap... [more]
PCNA_STYCL6.165e-6457.51Proliferating cell nuclear antigen OS=Styela clava... [more]
PCNA_SCHPO2.766e-6256.70Proliferating cell nuclear antigen OS=Schizosaccha... [more]
PCNA_DICDI3.597e-6157.50Proliferating cell nuclear antigen OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionC32103D08EF RVDevelopN Citrus clementina cDNA clone C32103D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921302 ID=FC921302; Name=FC921302; organism=Citrus clementina; type=EST; length=703bp
GAAGCTTTCCCTTTCTATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGATTTCTGTCAC
AAAGGAGGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACATAA
ATTGAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAAT
TCA
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