FC921302

Overview
NameFC921302
Unique NameFC921302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METTH (DNA polymerase sliding clamp OS=Methanobacterium thermoautotrophicum GN=pcn PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKP 635
            M +  L   ++L+   +AI  +V++     SA G  L A+D SH+  V L L++E F+ Y CD    + ++   + K+LK A  +D + L  D+G+  + F  E+     +  F+++L+DI+ E    PE EY     +P         D+    D +   V ++    S  G+ G A I       +DKP
Sbjct:    1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEGNLIIQFEGEA-----VRTFKIRLIDIEYETPSPPEIEYENEFEVPFQLLKDSIADIDIFSDKITFRVDEDRFIASAEGEFGDAQIEYLHGERIDKP 186          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METVS (DNA polymerase sliding clamp OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pcn PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQN 617
            KKV+ A   LV++  F+   TG    AMD SHVALV++ +  E FE Y  D +  +G++L  + K++  +  D+ + L+ DD  + +   F+S    K   F + L D+ S +L +P+  Y   V + +  F    KD   + D + + V ++     ++GD+  +  V   N
Sbjct:   12 KKVINATSNLVDEICFEVDETGIKASAMDPSHVALVSMGMPKEVFESYEGDIH-DIGIDLEALKKIIARSKGDEKLILELDDEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDISYPNQVSIKAGAFVEALKDAELVNDHITLKVDEDKFVIYSKGDLNQSETVFENN 180          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METST (DNA polymerase sliding clamp OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pcn PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 602
            M +L L   S+ K   +AI  +V++   +  + G  L A+D SH+  V L L+   F+ Y CD+ I + ++   + K+LK + NDD++ L  D G+  +T  FE   +     F++KL+D++ +    P+  Y   + +P +      +D+  + D V   V ++ +     GD   A I
Sbjct:    1 MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIYECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILT--FEGAVK---KTFKVKLIDLEYDTPSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKI 175          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METJA (DNA polymerase sliding clamp OS=Methanocaldococcus jannaschii GN=pcn PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 46/175 (26.29%), Postives = 87/175 (49.71%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTT 623
            KKV++ I  L+++  F+    G    AMD SHVALV+L +    FE Y  D +  +G++L    K++  A   D + L+ D+  + +  +FE+  + K   F + L+DI +  + +PE EY  ++ +    F    KD     D V++   ++      +GD+     +  ++++
Sbjct:   13 KKVVDTISTLLDEICFEVDEEGIKASAMDPSHVALVSLEIPRLAFEEYEADSH-DIGIDLEAFKKVMNRAKAKDRLILELDEEKNKLNVIFENTGKRK---FSLALLDISASSVKVPEIEYPNVIMIKGDAFKEALKDADLFSDYVILKADEDKFVIHAKGDLNENEAIFEKDSS 183          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METM6 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcn PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 48/169 (28.40%), Postives = 83/169 (49.11%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 605
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  E FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKEVFEEYEGDIH-DIGIDLEALKKIIARGKGDEKLILDLDVEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETV 176          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METS3 (DNA polymerase sliding clamp OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=pcn PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 46/194 (23.71%), Postives = 91/194 (46.91%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA 644
            M +  L   S+LK   +AI  +V++      + G  L A+D SH+  V L L++  F+ Y CD    + ++      +LK A + D + +  D+G+  +TF       D    F+++L+DI+ ++   PE E+ A  ++          D+    D + + V ++  + S  G+ G A++       ++  E++
Sbjct:    1 MFKAELSDSSILKTSFDAISSIVDEVQIQTDSEGMRLDALDRSHITFVHLELKASLFDEYVCDVPEKINIDTGEFMSVLKRAKSQDRVIMSLDEGNFIITF-----EGDATRTFKIRLIDIEYDNPTPPELEHPASFKVHFGILKDAINDIDIFSDKIALQVDEDYFRASADGEFGDASVKYLHGENINTQEKS 189          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METMP (DNA polymerase sliding clamp OS=Methanococcus maripaludis GN=pcn PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 48/182 (26.37%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA 644
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + +      ++GD+  +  V   + ++D  + A
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDVEKNKLNITFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDENKFVIYSKGDLNQSETVF--DNSIDDDDNA 187          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METM7 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcn PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 605
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + ++     ++GD+  +  V
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDTEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDEDKFIIYSKGDLNQSETV 176          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METM5 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcn PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 605
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDVH-DIGIDLEALKKIIARGKGDEKLILDLDAEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETV 176          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_THEPD (DNA polymerase sliding clamp OS=Thermofilum pendens (strain Hrk 5) GN=pcn PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 45/164 (27.44%), Postives = 81/164 (49.39%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIG 590
            K ++E++  +V++ANF  S  G  L+A+D   +A+V L + S  FE Y  D+   +   L+++ K+LK A +DD I+ +   G   +T    +  +     F+  L+DI  + L  P+  +    +M S  F    KD + + ++V +    E +    R D G
Sbjct:   13 KYIIESLATIVDEANFVASPEGLKLRALDPGRIAMVDLFIPSNLFEEYSVDQETKISAVLDDIDKVLKRAKSDDKISFEVSQGRLIITLSGRAERR-----FKFPLIDIAGQELPSPKLNFTVAAKMLSDTFRDALKDASLVSESVKLKAEDESLWLLARSDKG 171          
The following BLAST results are available for this feature:
BLAST of FC921302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PCNA_METTH2.295e-1627.75DNA polymerase sliding clamp OS=Methanobacterium t... [more]
PCNA_METVS3.914e-1628.90DNA polymerase sliding clamp OS=Methanococcus vann... [more]
PCNA_METST1.943e-1527.22DNA polymerase sliding clamp OS=Methanosphaera sta... [more]
PCNA_METJA9.642e-1526.29DNA polymerase sliding clamp OS=Methanocaldococcus... [more]
PCNA_METM63.664e-1428.40DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METS34.785e-1423.71DNA polymerase sliding clamp OS=Methanobrevibacter... [more]
PCNA_METMP6.249e-1426.37DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM76.249e-1427.22DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM56.249e-1427.81DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_THEPD1.392e-1327.44DNA polymerase sliding clamp OS=Thermofilum penden... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103D08EF RVDevelopN Citrus clementina cDNA clone C32103D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921302 ID=FC921302; Name=FC921302; organism=Citrus clementina; type=EST; length=703bp
GAAGCTTTCCCTTTCTATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGATTTCTGTCAC
AAAGGAGGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACATAA
ATTGAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAAT
TCA
back to top