FC921302

Overview
NameFC921302
Unique NameFC921302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_META3 (DNA polymerase sliding clamp OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pcn PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKF--STRGDIGTANIVL-RQNTTV 626
            KK++++I  LV++  F+    G    AMD SHVAL+++ +  E F+ Y  D +  +G++L  + K++  A  ++ + L+ D   + +  + ++    K   F + L D+ S ++ +PE  Y   V + +       KD   + D V + +T++G KF   ++GDI T   VL R N ++
Sbjct:   12 KKIIDSISNLVDEICFEVDELGIKANAMDPSHVALISVNIPKESFDEYVSDTH-DIGVDLEALKKIMNRAKPNEKLMLELDMEKNKLDIILKNEGTRK---FSISLYDVSSSNVKVPEIGYPNEVMIKAGTIVESLKDAELVNDHVSLKITEDG-KFIIYSKGDINTNETVLDRDNESI 185          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_ARCFU (DNA polymerase sliding clamp OS=Archaeoglobus fulgidus GN=pcn PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 48/174 (27.59%), Postives = 81/174 (46.55%), Query Frame = 3
Query:   78 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLG----IPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDI 587
            ++ G LLK V  AI  LV++A       G   +A+D ++VA+V + +  + FE Y  D   ++G++++ +  + K     D++ L  +D         ES  + K    E K+  ID   +     IPE E  A + M + EF +       I D V+    KEG +   +GD+
Sbjct:    5 IMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVED---------ESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDV 169          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA_METTP (DNA polymerase sliding clamp OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=pcn PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 50/192 (26.04%), Postives = 92/192 (47.92%), Query Frame = 3
Query:   78 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVD-KPEEA 644
            ++    L+  +EA+  LV++  F  +  G  L+A+D ++VA+V+L + +  FE Y+      +G++L  +S +L  A   + + L+  +    +     S        + + L+D  +  +   IPE +  A V +P AEF R  K    + D VV+ V  +      +GDI    + +R +  +D KP EA
Sbjct:    5 VIDAETLRDAIEAVSSLVDEVKFTITEKGLELKAVDPANVAMVSLKIDASAFEFYQATPG-EIGVDLVRLSDLLSMADRGERVRLELLEDERKLRIGVGS------LSYTLSLIDPSAIRKEPRIPELDLPAHVAIPGAEFRRAIKAAEKVSDHVVLGVKDDIFYMEAKGDIDALKLTMRSSELLDMKPGEA 189          
BLAST of FC921302 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRAE (DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum GN=pcnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 43/172 (25.00%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  105 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNT 620
            ++++I  LV +ANF     G  L+A+D S  A+V L +  E FE +     +  G+N   + K+L+     D I+++ ++G   +  + +S     +    +  +++  E L  P+  Y A+V+  S   A   KD  ++ D V    ++E +  S   D G   + L +N+
Sbjct:   17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKELKKLLRRVKKGDKISMEFEEGRVRIKLIGKS-----VRSIVVPSIEVVGEELPTPKVVYTAMVKAASDVLATAVKDADAVADEVKFEASEEALIISASSDKGEVEVKLDKNS 183          
The following BLAST results are available for this feature:
BLAST of FC921302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PCNA_META32.375e-1327.93DNA polymerase sliding clamp OS=Methanococcus aeol... [more]
PCNA_ARCFU5.849e-1227.59DNA polymerase sliding clamp OS=Archaeoglobus fulg... [more]
PCNA_METTP7.639e-1226.04DNA polymerase sliding clamp OS=Methanosaeta therm... [more]
PCNA1_PYRAE9.977e-1225.00DNA polymerase sliding clamp A OS=Pyrobaculum aero... [more]

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Properties
Property NameValue
Genbank descriptionC32103D08EF RVDevelopN Citrus clementina cDNA clone C32103D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921302 ID=FC921302; Name=FC921302; organism=Citrus clementina; type=EST; length=703bp
GAAGCTTTCCCTTTCTATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGATTTCTGTCAC
AAAGGAGGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACATAA
ATTGAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAAT
TCA
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