FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  247 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 624
            ENLK+T L++ H+  G KMVPF GW MP+QY   I+E  +  R +  +FDVSHM  + + GK    F+  L+  DV+ L  G    T     +GG +DD +  K   +   LVVNA  +DKDLAHI
Sbjct:    2 ENLKRTPLYEEHIKLGAKMVPFGGWEMPVQYT-GILEEHMAVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDLLAYKYSTERYLLVVNAANKDKDLAHI 126          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRD 690
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +  +       +T+RD
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPYQVE-------VTVRD 140          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            +TAL+D H+A GGKMV F GW MPI Y   I E     RQN  +FDVSHM  + + G     +L +L+  DV  + PG    T   N+NGG IDD ++ K +D+   LVVN   R+ DL  +E H   F
Sbjct:    4 RTALYDAHLAAGGKMVDFGGWDMPINYGSQIEEHHA-VRQNAGVFDVSHMTVVDIAGAGARDYLRQLLANDVDRIDPGRALYTGMLNDNGGVIDDLIVYK-RDNDYRLVVNCATRETDLGWMEKHAGGF 130          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_YERP36.468e-2242.47Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_CARHZ1.103e-2142.86Aminomethyltransferase OS=Carboxydothermus hydroge... [more]
GCST_YERPY1.882e-2141.78Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP1.882e-2141.78Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN1.882e-2141.78Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG1.882e-2141.78Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE1.882e-2141.78Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]
GCST_YERPB1.882e-2141.78Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA1.882e-2141.78Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_ALCBS1.882e-2143.41Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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