FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 636
            L++T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KGKD V FL+K++  DVA L  G    T+   E+GG +DD ++ K  DDH  LVVNA   +KD A +  H+
Sbjct:    2 LQRTPLFPLYAEYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFEVKGKDSVAFLQKMMTNDVAKLTDGRAQYTLMCYEDGGTVDDLLVYKKADDHYLLVVNAANIEKDFAWLSEHV 128          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAHJ (Aminomethyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R    +FDVSHM  +S+KG D   F++ L+  D   L       T   NE GG IDD V  K+ D+   L+VNA   DKD A ++ H   F  +  +VS
Sbjct:    5 LKKTPLYQNYVDSGAKIVEFGGWAMPVQFT-SIKEEHNAVRYEVGMFDVSHMGEISIKGNDASKFVQYLLSNDTNNLTDTKAQYTALCNEEGGIIDDLVTYKIGDNDYLLIVNAANTDKDFAWVQKHAPKFDVEVSNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_DECAR (Aminomethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 630
            LKKT L+  H A   +MV F GW MP+ Y   I E     R N  +FDVSHMC + + G DC  FL +LV  DVA L   G        NE GG IDD +I  + D    +VVNAG  +KDLA ++A
Sbjct:    2 LKKTVLNAAHRAMNARMVDFGGWDMPVNYGSQIEEHNA-VRNNCGMFDVSHMCPVDVVGADCRTFLSRLVANDVAKLKVSGKALYAAMLNEAGGVIDDLIIYFLTDTRFRIVVNAGTAEKDLAWMQA 127          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            +K T L++ HV  G KMV FAG++MPIQY  SI +  L  R+N  +FDVSHM  + ++GKD   F++ L+  D   L PG    T   NENGG +DD +  K+ ++   LV+NA   +KD + ++   +SF
Sbjct:    1 MKYTPLYEEHVKLGAKMVDFAGFNMPIQYT-SIKDEVLAVRKNVGMFDVSHMGEVIVEGKDSTKFVDFLITNDFKNLKPGEIVYTAMCNENGGFVDDLLAYKISEEKAMLVINASNIEKDFSWMKKISESF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATW (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATN (Aminomethyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_XYLFT (Aminomethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_XYLF2 (Aminomethyltransferase OS=Xylella fastidiosa (strain M23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATO (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATM (Aminomethyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  D+A L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDIAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_ANOFW4.192e-2141.41Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_STAHJ5.475e-2140.29Aminomethyltransferase OS=Staphylococcus haemolyti... [more]
GCST_DECAR7.151e-2144.88Aminomethyltransferase OS=Dechloromonas aromatica ... [more]
GCST_THEM49.339e-2141.22Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_FRATW9.339e-2139.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATN9.339e-2139.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_XYLFT1.220e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLF21.220e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_FRATO1.220e-2038.76Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATM1.220e-2038.76Aminomethyltransferase OS=Francisella tularensis s... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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