FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_PYRHO (Probable aminomethyltransferase OS=Pyrococcus horikoshii GN=gcvT PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDK 609
            +K+  + D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM  +  +GKD + FL+ +   D++     +GT T+  NE G   D++++  + ++   ++ ++   +K
Sbjct:    2 VKRVHIFDWHKEHARKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEK 119          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_NOCFA (Aminomethyltransferase OS=Nocardia farcinica GN=gcvT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1
Query:  250 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNA 594
            +L +  +HD H   G     F GW MP+ Y  ++ E     R    LFDVSH+   ++ G     F+   +  D+  + PG    T+  + +GG IDD +   V DD I+LV NA
Sbjct:    5 DLLRGPVHDLHGELGATFAEFGGWQMPVAYAGTVGEHQA-VRTTVGLFDVSHLGKATVAGPGAAQFVNATLTNDLGRIHPGKAQYTLCCSADGGVIDDLIAYYVADDEIFLVPNA 118          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_PYRAB (Probable aminomethyltransferase OS=Pyrococcus abyssi GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDK 609
            K+  L D+H  +  K+  FAGW MPI Y  SI E  L  R    LFDVSHM  +  +GKD + FL+ +   D++     +G  T+  NE G   D+++I  + ++   ++ ++   +K
Sbjct:    3 KRVHLFDWHKEHAKKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGLFDVSHMGEIYFRGKDALKFLQYVTTNDISKPPAISGIYTLVLNERGAIKDETLIFNMGNNEYLMICDSDAFEK 119          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_HALSA (Probable aminomethyltransferase OS=Halobacterium salinarium GN=gcvT PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/134 (31.34%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDD---HIYLVVNAG----CRDKDLAHIEAH 633
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG      D+   H +AH
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAH 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_HALS3 (Probable aminomethyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/134 (31.34%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDD---HIYLVVNAG----CRDKDLAHIEAH 633
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG      D+   H +AH
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAH 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRASN (Aminomethyltransferase OS=Frankia sp. (strain EAN1pec) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNA 594
            L+++ LH+ HV  G K   F GW MPI+Y    ++      R    +FDVSH+    + G     F+   +  D+  + PG    T+  +E GG +DD +      D+++LV NA
Sbjct:    4 LRRSPLHERHVELGAKTAAFGGWEMPIEYAGRGVLAEHAAVRGAVGIFDVSHLGKARVAGPGAAEFVNTCLTNDLRRVGPGQAQYTLCCDETGGVVDDLIAYYYAVDNVFLVPNA 118          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  250 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 630
            +L+++ L+  HV  G KM  F GW MPI+Y    ++      R    +FDVSH+    + G     F+   +  D+  +APG    T+  N+ GG +DD +      + + LV NA    + +A + A
Sbjct:    3 DLRRSPLYGRHVDLGAKMAGFGGWEMPIEYAGRGVLAEHQAVRGAVGIFDVSHLGKAEVTGAGAAEFVNACLSNDLGRIAPGQAQYTLCCNDEGGVVDDLIAYLFSGERVLLVPNAANNAEVVARLAA 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STRAW (Aminomethyltransferase OS=Streptomyces avermitilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 34/113 (30.09%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNA 594
            + TAL   H + G  M  FAGW MP++Y  S  +  L  R    LFD+SHM  +++ G      L   ++ ++A +  G    T+    +GG +DD ++ ++++    +V NA
Sbjct:    7 RHTALDALHRSLGATMTDFAGWDMPLRY-GSERDEHLAVRSKAGLFDLSHMGEITVTGPGAAALLNYALVGNIASVGVGRARYTMICRADGGILDDLIVYRLQEQTYLVVANA 118          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_PYRHO1.035e-1131.09Probable aminomethyltransferase OS=Pyrococcus hori... [more]
GCST_NOCFA1.035e-1133.04Aminomethyltransferase OS=Nocardia farcinica GN=gc... [more]
GCST_PYRAB1.765e-1133.05Probable aminomethyltransferase OS=Pyrococcus abys... [more]
GCST_HALSA2.306e-1131.34Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_HALS32.306e-1131.34Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_FRASN2.306e-1131.30Aminomethyltransferase OS=Frankia sp. (strain EAN1... [more]
GCST_FRAAA2.306e-1129.69Aminomethyltransferase OS=Frankia alni (strain ACN... [more]
GCST_STRAW6.708e-1130.09Aminomethyltransferase OS=Streptomyces avermitilis... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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