FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_SHEPW (Aminomethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTQYRIVVNSATREKDLAWINEQVKGFSVE 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_SHEPA (Aminomethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTEYRIVVNSATREKDLAWINEQVKGFSVE 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_BORPE (Aminomethyltransferase OS=Bordetella pertussis GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 627
            LK+T L + H+A G  MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++
Sbjct:    5 LKRTPLAEEHLAAGACMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ 129          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_PROMH (Aminomethyltransferase OS=Proteus mirabilis (strain HI4320) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 56/131 (42.75%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            K+T L+D HVA G +MV F GW MP+ Y   I E   N RQ+  +FDVSHM  + L G     FL  L+  DVA L   G    T   N +GG IDD ++    +    LVVN+  R+KDLA I  H K +
Sbjct:    3 KQTPLYDEHVACGARMVDFHGWMMPLHYGSQIDEHH-NVRQDAGMFDVSHMTIVDLHGPQVKDFLRYLLANDVAKLTEKGKALYTGMLNASGGVIDDLIVYYFDETFYRLVVNSATREKDLAWITEHAKDY 132          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  250 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMK 639
            NL+ T LHD     GG+MVPFAGW MP+Q+   + E     RQ   +FD+SHM  L L+G +    L+ LV  D+  + PG    TV  NE GG +DD V+      K     + +V+NA C + D   ++ H++
Sbjct:    2 NLQHTPLHDLCRDAGGRMVPFAGWDMPVQFSGLLQEHQA-VRQQVGMFDISHMGVLRLEGTNPKDTLQALVPTDLNRIGPGEACYTVLLNETGGILDDLVVYDLGTNKQDSQSLLIVINAACSETDTIWLKQHLQ 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 633
            LK+T L   +   G K V F GW MP+Q+  SI E     R    LFDVSHM  + ++G   +PFL+KL+  DVA L PG    T+  +E+ G +DD +I +  +D   LVVNA   +KD A +  H
Sbjct:    2 LKRTPLFPVYARYGAKTVEFGGWEMPVQFS-SIKEEHNAVRTRAGLFDVSHMGEIIVRGGGSLPFLQKLMTNDVAKLRPGRVQYTLMCDESAGTVDDLLIYQKGEDDYLLVVNAANTEKDFAWLSEH 127          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FLAPJ (Aminomethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 633
            +K TAL + H + G KMVPFAG++MP+QY+    E  +  R    +FDVSHM    LKG++ +  ++K+   D + L  G    +   N  GG +DD +I K+ D+H  LVVNA   +KD   I +H
Sbjct:    1 MKNTALTNIHESLGAKMVPFAGYNMPVQYEGVNAEHEI-VRTGVGVFDVSHMGEFFLKGENALALIQKVTSNDASKLVDGKAQYSCLPNNEGGIVDDLIIYKIADNHYMLVVNASNIEKDWNWISSH 126          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNAANTDKDFAWMQAQAEGF 133          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNASNTDKDFAWMQAQAEGF 133          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  247 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIADVS 141          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_SHEPW3.924e-1940.60Aminomethyltransferase OS=Shewanella piezotolerans... [more]
GCST_SHEPA3.924e-1940.60Aminomethyltransferase OS=Shewanella pealeana (str... [more]
GCST_BORPE3.924e-1943.65Aminomethyltransferase OS=Bordetella pertussis GN=... [more]
GCST_PROMH5.125e-1942.75Aminomethyltransferase OS=Proteus mirabilis (strai... [more]
GCST_PROM35.125e-1937.78Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_GEOTN5.125e-1940.94Aminomethyltransferase OS=Geobacillus thermodenitr... [more]
GCST_FLAPJ5.125e-1939.37Aminomethyltransferase OS=Flavobacterium psychroph... [more]
GCST_DESHY5.125e-1937.40Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD5.125e-1937.40Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_CLOBM5.125e-1938.30Aminomethyltransferase OS=Clostridium botulinum (s... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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