FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 64/178 (35.96%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI+   A     NT
Sbjct: 1417 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISGGAAGGVDFNT 1578          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 64/178 (35.96%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI+   A     NT
Sbjct: 1215 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISGGAAGGVDFNT 1376          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 64/178 (35.96%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI+   A     NT
Sbjct: 1417 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISGGAAGGVDFNT 1578          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 64/178 (35.96%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI+   A     NT
Sbjct: 1418 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISGGAAGGVDFNT 1579          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            G HRILI+ Q    + I E  L     KS  Y+RLDGS   E R ++V+A+ ++P I                 SADT++F + DWNP  D QAMDRAHR+GQ K V V RL+ R T+E+K++   + K  I   V+
Sbjct: 1251 GGHRILIYFQMTRMMQIFEEYLAY---KSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 64/178 (35.96%), Postives = 85/178 (47.75%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI    A     NT
Sbjct: 1398 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVITGGAAGGVDFNT 1559          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 64/178 (35.96%), Postives = 85/178 (47.75%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI    A     NT
Sbjct: 1405 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVITGGAAGGVDFNT 1566          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 57/142 (40.14%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASM 546
            HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F + P I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI RGT+EE++      K  +   VI    AS+
Sbjct: 1643 HRVLLYFQMTRMIDMMEEYLTYRNYK---YCRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVIQGGGASV 1781          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE--NASMKTMNTGQLLDLFASAET 597
            G HR+LI+ Q    +D++E  L     +  +++RLDGS + E R D+V  + + P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RL++RGT+EE++    + K  +   V+  +     +KT+ +G  +   A+A T
Sbjct: 1392 GDHRVLIYFQMTKMMDLMEEYLTY---RQYSHIRLDGSSKLEDRRDLVHDWQTRPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEGKTLQKDVKTIESGGDVKAAAAAST 1551          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENAS 543
            S KL  L E++ E          EN      HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F + P I                 SADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI RGT+EE++      K  +   VI   +++
Sbjct: 1697 SGKLAKLDELLREL--------KENG-----HRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVITGGSSA 1852          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
INO80_NEOFI9.742e-2135.96Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPOR9.742e-2135.96Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPFU9.742e-2135.96Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
INO80_ASPCL9.742e-2135.96Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_CANAL1.272e-2040.88Putative DNA helicase INO80 OS=Candida albicans GN... [more]
INO80_ASPTN1.272e-2035.96Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPNC1.272e-2035.96Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_GIBZE2.170e-2040.14Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_VANPO2.834e-2034.97Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]
INO80_NEUCR2.834e-2037.21Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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