FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMAL1_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis GN=smarcal1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 46/150 (30.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTV-INAENASMKTMNT 561
            G+ + L+FA HK  LD I  +L +   K V Y+R+DG+  S  R  +   F                       SAD +VF E  WNP    QA DR HR+GQ   V++H L+ +GT ++ +  + + K+ +     ++  N S  T +T
Sbjct:  745 GREKFLVFAHHKLVLDNICEELGK---KEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEANFSETTEST 891          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            +I++ + + + LD+ E+       +    LRLDG++   +R  +V  FN DP  DA                  A+ L+  + DWNP  D QA+ R  R GQKK   V+R I  GT+EEK+   Q  K S+++ V++      +  +   L  LF
Sbjct:  629 KIVLISNYTSTLDLFEQ---LCRARGYKALRLDGTMNVNKRQRLVDTFN-DPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLF 779          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 46/166 (27.71%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENAS--MKTMNTGQLLDLFASAETPXKG 609
            Q ++LIF+     LDI+E  L     K   +LRLDGS +   R  ++  F  D  I                  A+ ++  +  +NP  D QA DRAHR+GQ K V++  LI + ++EEK+  L + K+++ + +   + +   +++  +  L D+     +  KG
Sbjct:  966 QEKVLIFSLFTQVLDILEMVLSTLDYK---FLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDVLESKVSDMLEDIIYDENSKPKG 1128          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMAL1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Mus musculus GN=Smarcal1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 41/132 (31.06%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSI 510
            G+ + L+FA HK  LD + ++L     K+V ++R+DGS  S  R    + F                       +AD +VF E  WNP    QA DR HR+GQ   V +H L+ +GT ++ +  L + K+ +
Sbjct:  682 GREKFLVFAHHKVILDAVAKEL---ERKNVQHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 810          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica GN=RAD5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 39/131 (29.77%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  130 LIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTV 522
            ++F+Q  ++LDII+ +L     + +   R DG++  ++R D++KAF                       +A+    M+  W   ++ QA+DR HR+GQ K VHV R I+  ++EEK++ +Q+ K+ +A T+
Sbjct:  878 VVFSQFTSYLDIIQTEL---RREKIQAFRFDGTLSRQQRTDVLKAFGLSKG-SVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQQKMVLAGTL 1004          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 51/191 (26.70%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   16 KLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQ---------------THMKSVTYLRLDGSVESERRFDIVKAFN--SDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN 537
            +L +SPK+V L  +++E            ++ +G  +IL+F+Q  + L I+E  L +               T +++V Y RLDGS  +  R  ++  FN  S+  +                  A+ +V  +  WNP  D QA+ R +R GQ+K  +++RL+   TLE+K+   Q  K  +++ V++  N
Sbjct:  711 QLQNSPKMVLLFHLIEE------------SMRMGD-KILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLN 888          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1
Query:   19 LHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDL---------------FQTHMKSVTYLRLDGSVESERRFDIVKAFN--SDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN 537
            L +SPK+V L  +++E            +V +G  +IL+F+Q  + L +IE  L                Q  +++++Y RLDGS  +  R  ++  FN  S+ T                   A+ +V  +  WNP  D QA+ R +R GQKK  +++RL+   TLE+K+   Q  K  +++ V++  N
Sbjct:  717 LENSPKMVLLFHLIEE------------SVKLGD-KILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  130 LIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFK 501
            ++F+Q  +FLD++E  L     +   +LR DG +  + R  ++K FN                      +A ++  M+  WNP  + QA+ R HR+GQK+ V V R I++ T+EE++  +Q  K
Sbjct: 1131 IVFSQWTSFLDLLEIPL---RRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARK 1251          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
SMAL1_XENLA8.266e-1230.67SWI/SNF-related matrix-associated actin-dependent ... [more]
RAD54_SCHPO8.266e-1230.32DNA repair protein rhp54 OS=Schizosaccharomyces po... [more]
FUN30_YEAST8.266e-1227.71Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]
SMAL1_MOUSE1.410e-1131.06SWI/SNF-related matrix-associated actin-dependent ... [more]
RAD5_YARLI1.841e-1129.77DNA repair protein RAD5 OS=Yarrowia lipolytica GN=... [more]
ARIP4_XENTR1.841e-1126.70Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE... [more]
ARIP4_HUMAN2.405e-1127.89Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=... [more]
SM3L3_ARATH6.997e-1129.84Putative SWI/SNF-related matrix-associated actin-d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
back to top