FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMAL1_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis GN=smarcal1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 46/150 (30.67%), Postives = 71/150 (47.33%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTV-INAENASMKTMNT 561 G+ + L+FA HK LD I +L + K V Y+R+DG+ S R + F SAD +VF E WNP QA DR HR+GQ V++H L+ +GT ++ + + + K+ + ++ N S T +T Sbjct: 745 GREKFLVFAHHKLVLDNICEELGK---KEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEANFSETTEST 891
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 +I++ + + + LD+ E+ + LRLDG++ +R +V FN DP DA A+ L+ + DWNP D QA+ R R GQKK V+R I GT+EEK+ Q K S+++ V++ + + L LF Sbjct: 629 KIVLISNYTSTLDLFEQ---LCRARGYKALRLDGTMNVNKRQRLVDTFN-DPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLF 779
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 46/166 (27.71%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENAS--MKTMNTGQLLDLFASAETPXKG 609 Q ++LIF+ LDI+E L K +LRLDGS + R ++ F D I A+ ++ + +NP D QA DRAHR+GQ K V++ LI + ++EEK+ L + K+++ + + + + +++ + L D+ + KG Sbjct: 966 QEKVLIFSLFTQVLDILEMVLSTLDYK---FLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDVLESKVSDMLEDIIYDENSKPKG 1128
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMAL1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Mus musculus GN=Smarcal1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 41/132 (31.06%), Postives = 64/132 (48.48%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSI 510 G+ + L+FA HK LD + ++L K+V ++R+DGS S R + F +AD +VF E WNP QA DR HR+GQ V +H L+ +GT ++ + L + K+ + Sbjct: 682 GREKFLVFAHHKVILDAVAKEL---ERKNVQHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 810
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica GN=RAD5 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 39/131 (29.77%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 130 LIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTV 522 ++F+Q ++LDII+ +L + + R DG++ ++R D++KAF +A+ M+ W ++ QA+DR HR+GQ K VHV R I+ ++EEK++ +Q+ K+ +A T+ Sbjct: 878 VVFSQFTSYLDIIQTEL---RREKIQAFRFDGTLSRQQRTDVLKAFGLSKG-SVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQQKMVLAGTL 1004
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 51/191 (26.70%), Postives = 91/191 (47.64%), Query Frame = 1 Query: 16 KLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQ---------------THMKSVTYLRLDGSVESERRFDIVKAFN--SDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN 537 +L +SPK+V L +++E ++ +G +IL+F+Q + L I+E L + T +++V Y RLDGS + R ++ FN S+ + A+ +V + WNP D QA+ R +R GQ+K +++RL+ TLE+K+ Q K +++ V++ N Sbjct: 711 QLQNSPKMVLLFHLIEE------------SMRMGD-KILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLN 888
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11 Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 Query: 19 LHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDL---------------FQTHMKSVTYLRLDGSVESERRFDIVKAFN--SDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN 537 L +SPK+V L +++E +V +G +IL+F+Q + L +IE L Q +++++Y RLDGS + R ++ FN S+ T A+ +V + WNP D QA+ R +R GQKK +++RL+ TLE+K+ Q K +++ V++ N Sbjct: 717 LENSPKMVLLFHLIEE------------SVKLGD-KILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11 Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1 Query: 130 LIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFK 501 ++F+Q +FLD++E L + +LR DG + + R ++K FN +A ++ M+ WNP + QA+ R HR+GQK+ V V R I++ T+EE++ +Q K Sbjct: 1131 IVFSQWTSFLDLLEIPL---RRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARK 1251 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |