FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 56/138 (40.58%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN 528
            G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI RGT+EE++      K  +   VI+
Sbjct: 1395 GGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVIS 1529          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            G HR+L++ Q    +D++E  L   + K   YLRLDGS + E R D V  F + P I                 SADT++F + DWNP  D QAMDRAHRLGQ + V V+R+I RGT+EE++      K  +   V+          NT
Sbjct: 1437 GGHRVLLYFQMTRMIDLMEEYLTYRNYK---YLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEERIRKRALQKEEVQKVVMTGGAGGGVDFNT 1582          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 61/200 (30.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:    1 ISELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDL-FQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597
            ISE+      P+L+       +CG           + V  HR+LIF Q    LD++E  L +  H+    YLRLDGS   E+R  +++ FN D  I                  ADT++F + DWNP  D QA DR HR+GQ + VH++RL+   T+E  ++     K  +++  I   N +     +  + DLF   ++
Sbjct: 1640 ISEMTTKFPDPRLIQY-----DCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHI----YLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQS 1830          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20
Identity = 63/178 (35.39%), Postives = 85/178 (47.75%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            S KL  L E++ E             +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F   P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI R T+EE++      K  +   VI+   A     NT
Sbjct: 1320 SGKLAKLDELLRE-------------LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNT 1481          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDL-FQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN---ASMKTMNTGQLLDL 579
            HR+LIF Q    LD++E+ L +  H+    YLRLDGS   E+R  +++ FN+D  I                  ADT+VF + DWNP  D QA DR HR+GQ + VH++RLI   T+EE ++     K  + +  I   N   A  K     +L D+
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFLTYHGHL----YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDM 2212          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 53/151 (35.10%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI--NAENASMKTMNTGQ 567
            HR+LI+ Q    +D++E  L     +   ++RLDGS + E R D+V  + ++P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RL++RGT+EE++    + K  +   V+    +  ++KT+  G+
Sbjct: 1316 HRVLIYFQMTKMMDLMEEYLTY---RQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEVGE 1463          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 53/151 (35.10%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI--NAENASMKTMNTGQ 567
            HR+LI+ Q    +D++E  L     +   ++RLDGS + E R D+V  + ++P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RL++RGT+EE++    + K  +   V+    +  ++KT+  G+
Sbjct: 1322 HRVLIYFQMTKMMDLMEEYLTY---RQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEVGE 1469          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            HR+LIF Q    LDI+E+ L   ++    YLRLDG+ + E+R  + + FN+D  I                  ADT++F + DWNP  D QA DR+HR+GQ + VH++RLI   T+E  ++     K  +   VI     + +      +LDLF
Sbjct: 1008 HRVLIFTQMTKVLDILEQFL---NIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLF 1158          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN 528
            +    HR+LI+ Q    +D++E  L     K   YLRLDGS +  +R D+V  + + P +                 +ADT++F + DWNP  D QAMDRAHR+GQ+K V V+R I RGT+EE+++   + K  +   VI+
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYK---YLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVIS 1578          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTG 564
            HR+LI+ Q    +D++E  L     K   Y+RLDGS + + R D+V  + + P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RL+ RGT+EE++    + K  +   V+  ++A      +G
Sbjct: 1159 HRVLIYFQMTKMMDLMEEYLTYRQHK---YIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEGKSAIANKEESG 1303          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
INO80_COCIM2.834e-2040.58Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
INO80_SCLS13.702e-2038.26Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
DOM_DROME3.702e-2030.50Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
INO80_EMENI4.835e-2035.39Putative DNA helicase ino80 OS=Emericella nidulans... [more]
SRCAP_HUMAN6.314e-2036.31Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
INO80_YEAST8.247e-2035.10Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_YEAS78.247e-2035.10Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
SWR1_SCHPO1.407e-1935.06Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
INO80_SCHPO1.837e-1936.88Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_DEBHA1.837e-1935.81Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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