FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE 534
            +  G+HR+LI+ Q    +D+IE  L     K   ++RLDGS + E R D+V  + +   I                 SADT++F + DWNP  D QAMDRAHRLGQ K V V+RL+++GT+EE++    + K  +   V+  +
Sbjct: 1252 LKAGEHRVLIYFQMTRMMDLIEEYLTYRQYK---HIRLDGSSKLEDRRDLVHDWQTKSDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEGK 1391          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            HR+LI+ Q    +D++E  L     +   ++RLDGS + E R D+V  + ++P I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RL++RGT+EE++    + K  +   V+  +        T
Sbjct: 1312 HRVLIYFQMTKMMDLMEEYLTY---RQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTKDTNIQTT 1455          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            G HR LIF Q    LD++E+ L   ++  + Y+RLDG+ + E+R  + + FN+DP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + N VI
Sbjct: 1484 GGHRALIFTQMTKVLDVLEQFL---NIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVI 1617          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFAS 588
            G HR LIF Q    LDI+E+ L   +     Y+RLDG+ + E R  + + FNSDP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + + +I     +    +   + DLF S
Sbjct: 1193 GGHRALIFTQMTKVLDILEQFL---NYHGYLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDLFGS 1347          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 57/163 (34.97%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAETPXKG 609
            HR L+F+Q +  LDI+E  L    +  V Y R+DGS     R D+V  FN +   D                 AD ++  + DWNP  D QA +RA RLGQKK V V+RL+  GT+EEK+   Q FK  + N ++  +    +      L DLF   +   +G
Sbjct:  642 HRTLLFSQTRQMLDILEIGL--KDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILK-DPKQRRFFKMTDLHDLFTLGDNKTEG 801          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 53/159 (33.33%), Postives = 76/159 (47.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597
            HR LIF Q    LDI+E+ L   +     Y+RLDG+ + E R  + + FN+DP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R     T+E  ++     K  + N VI     +    +   + DL  S ET
Sbjct: 1234 HRALIFTQMTKVLDILEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQKGEFTTDYFSRLSVKDLLGSDET 1389          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDL-FQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA---------ENASMKTMNTGQLLDLFASAETPXKGGGVS 621
            HR+LI+ Q    +D++E  L F+ H     Y+RLDGS + + R D+V  + + P I                 +ADT+VF + DWNP  D QAMDRAHRLGQ + V V+RL+ R T+EE++    + K  +   V+           E+A+ K  +   LL L  S +    G GV+
Sbjct: 1328 HRVLIYFQMTKMMDLMEEYLTFKQHK----YIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRNTIEERMRDRAKQKEQVQQVVMEGKATTIMSKKEDAASKKKDVAFLL-LGGSGDGDGDGTGVN 1499          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE 534
            HR+LI+ Q    +D++E  L     +  T++RLDGS + + R D+V  + + P I                 +ADT++F + DWNP  D QAMDRAHRLGQ + V V+RL++RGT+EE++    + K  +   V+  +
Sbjct: 1336 HRVLIYFQMTKMMDLMEEYLTY---RQYTHIRLDGSSKLDDRRDLVHDWQTKPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEGK 1470          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTV 522
            +  G HR+L+FAQ    L+I+E  +   + +   YLRLDGS     R D+V+ F     I                 +ADT++F E DWNP  D QAMDRAHRLGQ K V V+RLI + T+EEK++     + S  NTV
Sbjct: 1218 LRAGNHRVLLFAQMTKMLNILEDYM---NYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKIL----HRASQKNTV 1349          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFAS 588
            +  G HR LIF Q    LDI+E+ L   ++    YLRLDG+ + E+R  +   FN DP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++RL+   T+E  ++     K  + + VI     +    N   + D+  S
Sbjct: 1518 LQAGGHRALIFTQMTKVLDILEQFL---NIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNRLSVRDVLGS 1675          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
INO80_ASHGO1.837e-1937.06Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]
INO80_CANGA2.399e-1935.37Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
SWR1_YARLI4.093e-1935.04Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
SWR1_CANGA4.093e-1932.91Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
RHP26_SCHPO9.118e-1934.97DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
SWR1_ASHGO1.191e-1833.33Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
INO80_LODEL1.191e-1835.03Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]
INO80_KLULA1.191e-1836.23Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]
INO80_ARATH1.191e-1841.01DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
SWR1_NEUCR1.555e-1832.92Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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