FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAETP 600
            HR LIF Q    LDI+E+ L   +     Y+RLDG+ + E R  + + FNSDP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + N VI   + +        + DL   AE P
Sbjct: 1327 HRALIFTQMTKVLDILEQFL---NFHGYLYMRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLL-GAEAP 1482          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 1
Query:   28 SPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAEN 537
            S KL AL++++ +C                 ++ L+F Q    LDI+E  +F  H+ + +++RLDGS + E+R  IV  FN+D +I                 +A+ ++F + DWNP  D QAMDR HR+GQ K VHV R +   T+EE +   Q  K  + N  IN  N
Sbjct: 1767 SGKLCALEKLLSKC-------------KREGNKCLLFTQFIKMLDILE--IFLNHL-NYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGN 1920          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +  G HR LIF Q    LDI+E+ L   ++    YLRLDG+ + E+R  +   FN+DP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++RL+   T+E  ++     K  + + VI
Sbjct: 1383 LQAGGHRALIFTQMTKVLDILEQFL---NIHGHKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVI 1519          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVM 483
            HR+LIF Q    LDI+E  +F +H     YLRLDGS + E R  + + FNSD  I                  ADT+ F + DWNP  D Q MDRAHR+GQ + VH++R +   T+EE ++
Sbjct:  955 HRVLIFTQMTRVLDILE--MFLSH-NGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENML 1072          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 52/139 (37.41%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT--IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            HRIL+F Q    ++I+E  L   H +   YLRLDGS +++ R  ++  FN DPT  ++                +ADT++  + DWNP +D QA DRAHR+GQ K V ++RLI   ++EE +++  ++K+ I   VI A
Sbjct:  753 HRILMFFQMTQIMNIMEDYL---HYRQWRYLRLDGSTKADDRSKLLGVFN-DPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQA 887          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 57/173 (32.95%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENAS--MKTMNTGQLLDLFASAETPXKGGGVSKLSD 633
            R+LIF+Q    LD++E   +  H +   Y RLDGS   E R + ++A+N+ D                    +AD ++  + DWNP  D QAMDRAHR+GQKK V V RLI   T++E+++     K+ + N VI     S   KT+  G ++ +             S +SD
Sbjct:  453 RVLIFSQFSRMLDLLEDFCWWRHYE---YCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISMIRHGAEQVFAAKDSTISD 622          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAETPXKGGGVSK 624
            HR LIF Q    LD++E+ L   +     Y+RLDG+ + E R  + + FN+D  I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + N VI   + +    +   + DL  S E P    G  K
Sbjct: 1263 HRALIFTQMTKVLDVLEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGS-ELPENASGGDK 1426          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 53/147 (36.05%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555
            G HRILIF Q    LDI+E  L   +     YLRLDG+ + E R  + + FN D  I A                ADT++F + DWN   + Q MDRAHR+GQ + VH++R +   T+EE ++     K  + N VI     + +T+
Sbjct: 1548 GGHRILIFTQMTRVLDILESFL---NYHGYRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEENMLRKANQKRLLDNVVIQQGEFNTETL 1691          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 48/135 (35.56%), Postives = 69/135 (51.11%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            HR LIF Q    LDI+E+ L   ++    Y+RLDG+ + E R  + + FN DP I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + N VI
Sbjct: 1383 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVI 1514          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            HR+L+F Q    +DI+E  L    MK + Y+RLDGS ++E R +++ AFN+ D                    +ADT++  + DWNP +D QA DRAHR+GQK  V + RLI   ++EE ++     K+ I   VI A
Sbjct:  808 HRVLMFFQMTQVMDIMEDFL---RMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQA 942          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
SWR1_KLULA1.555e-1833.75Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
HEPF1_PLAF71.555e-1834.12Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
SWR1_GIBZE2.031e-1835.71Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
SWR1_CRYNE2.653e-1841.32Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
SNF21_SCHPO3.465e-1837.41Chromatin structure-remodeling complex subunit snf... [more]
ISW1_CAEEL3.465e-1832.95Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
SWR1_YEAST4.525e-1831.55Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_USTMA4.525e-1836.05Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
SWR1_CANAL1.008e-1735.56Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
STH1_YEAST1.008e-1737.68Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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