FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 52/146 (35.62%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555
            +R+LIF+Q    LDI+   L    +K   + RLDGS++ E R   +  FN+D + D                 SADT+V  + DWNP  D QA  RAHR+GQKK V+++RL+ +GT+EE+++   + K+ + + VI   + + +T+
Sbjct:  808 NRVLIFSQMVRMLDILAEYLT---IKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTI 950          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLD 576
            R+LIF+Q    LDI+E      + +   Y R+DGS   E R + +  +N   +                   +ADT++  + DWNP  D QAMDRAHR+GQKK VHV+R +    +EEKV+     K+ +   VI  +    KT + G   D
Sbjct:  508 RVLIFSQMSRLLDILED---YCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ-QGTGKKTASLGNSKD 655          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE---------NASMKTMNTGQLLDLFASA--ETPXKGGGVSKLSD 633
            H++L+F+Q  + LDI+   +   H++   + RLDGS+    R   + +FN+DP +                 +ADT++  + DWNP  D QA DR HR+GQ K V V+RL+   T+++K++     K  +   +I+           N S   ++  +L++L  S   E   KG     +SD
Sbjct:  616 HKVLLFSQMTSMLDIL---MDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISD 794          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 51/158 (32.28%), Postives = 74/158 (46.84%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            HR LIF Q    LDI+E+ L   ++    Y+RLDG+ + E R  + + FN D  I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + N VI     +        + DL   AE
Sbjct: 1349 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGEFTTDYFGKFSVKDLVNDAE 1503          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 52/182 (28.57%), Postives = 90/182 (49.45%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE---------NASMKTMNTGQLLDLFASA--ETPXKGGGVSKLSD 633
            H++L+F+Q  + LDI+   +   H+++  + RLDGS+    R   + +FN+DP +                 +ADT++  + DWNP  D QA DR HR+GQ K V V+RL+   T+++K++     K  +   +I+           + S   ++  +L++L  S   E   KG     +SD
Sbjct:  599 HKVLVFSQMTSMLDIL---MDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLSQSKNFLDAKELMELLKSRDYEREVKGSREKVISD 777          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 54/176 (30.68%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA-----ENASMKTMNTGQLL-----DLFASAETPXKG 609
            G HR+LIF+Q    LDI+E       ++   Y R+DGS+  ++R D +  +N+                      +ADT++  + DWNP  D QA  RAHRLGQK  V ++R + +G++EE++ S+ + K+ + + V+ A     +  SM       +L     +LF   E P +G
Sbjct:  955 GGHRVLIFSQMTMMLDILEDFC---DVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDVLRWGTEELFKEEEAPVEG 1127          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +  G HR LIF Q    LD++E+ L   ++    YLRLDG+ + E+R  +   FN+D  I A                ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + + VI
Sbjct: 1343 LKAGGHRALIFTQMTKMLDVLEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVI 1479          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +  G HR LIF Q    LDI+E+ L   ++    YLRLDG+ + E+R  +   FN+D  I                  ADT++F + DWNP  D Q  DR HR+GQ + VH++R +   T+E  ++     K  + + VI
Sbjct: 1390 LKAGGHRALIFTQMTKMLDILEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVI 1526          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 65/211 (30.81%), Postives = 101/211 (47.87%), Query Frame = 1
Query:    4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN----AENASMKTMNTGQLLDL--------FASAET 597
            ++ H +++S K+  L +++ +  +   GS           R+LIF+Q    LDI+E      H ++  Y RLDG    E R   ++ FN D +                   +AD ++  + DWNP  D QAMDRAHR+GQKK V V RLI   T+EEK++     K+ +   VI      +N S   +N  ++L++        F+S ET
Sbjct:  422 TDTHLVYNSGKMAILDKLLPK--LQEQGS-----------RVLIFSQMTRMLDILED---YCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRS-NQLNKDEMLNIIRFGANQVFSSKET 615          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564
            +R+LIF+Q    LDI+   L     +   + RLDGS++ E R   +  FN++ + D                 SADT+V  + DWNP  D QA  RAHR+GQKK V+++RL+ +G++EE ++   + K+ + + VI   + + KT ++TG
Sbjct:  803 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 949          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CHD2_HUMAN1.008e-1735.62Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
ISW2_YEAST1.720e-1734.21ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
HELLS_HUMAN1.720e-1729.12Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
SWR1_DEBHA2.246e-1732.28Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
HELLS_MOUSE2.933e-1728.57Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
CHD3_CAEEL3.831e-1730.68Chromodomain-helicase-DNA-binding protein 3 homolo... [more]
SWR1_EMENI5.003e-1734.29Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SWR1_ASPFU6.534e-1734.29Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
ISWI_DROME6.534e-1730.81Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
CHD1_MOUSE6.534e-1734.67Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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