FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17 Identity = 52/146 (35.62%), Postives = 83/146 (56.85%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555 +R+LIF+Q LDI+ L +K + RLDGS++ E R + FN+D + D SADT+V + DWNP D QA RAHR+GQKK V+++RL+ +GT+EE+++ + K+ + + VI + + +T+ Sbjct: 808 NRVLIFSQMVRMLDILAEYLT---IKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTI 950
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17 Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLD 576 R+LIF+Q LDI+E + + Y R+DGS E R + + +N + +ADT++ + DWNP D QAMDRAHR+GQKK VHV+R + +EEKV+ K+ + VI + KT + G D Sbjct: 508 RVLIFSQMSRLLDILED---YCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ-QGTGKKTASLGNSKD 655
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17 Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE---------NASMKTMNTGQLLDLFASA--ETPXKGGGVSKLSD 633 H++L+F+Q + LDI+ + H++ + RLDGS+ R + +FN+DP + +ADT++ + DWNP D QA DR HR+GQ K V V+RL+ T+++K++ K + +I+ N S ++ +L++L S E KG +SD Sbjct: 616 HKVLLFSQMTSMLDIL---MDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISD 794
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17 Identity = 51/158 (32.28%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594 HR LIF Q LDI+E+ L ++ Y+RLDG+ + E R + + FN D I ADT++F + DWNP D Q DR HR+GQ + VH++R + T+E ++ K + N VI + + DL AE Sbjct: 1349 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGEFTTDYFGKFSVKDLVNDAE 1503
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17 Identity = 52/182 (28.57%), Postives = 90/182 (49.45%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE---------NASMKTMNTGQLLDLFASA--ETPXKGGGVSKLSD 633 H++L+F+Q + LDI+ + H+++ + RLDGS+ R + +FN+DP + +ADT++ + DWNP D QA DR HR+GQ K V V+RL+ T+++K++ K + +I+ + S ++ +L++L S E KG +SD Sbjct: 599 HKVLVFSQMTSMLDIL---MDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLSQSKNFLDAKELMELLKSRDYEREVKGSREKVISD 777
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17 Identity = 54/176 (30.68%), Postives = 88/176 (50.00%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA-----ENASMKTMNTGQLL-----DLFASAETPXKG 609 G HR+LIF+Q LDI+E ++ Y R+DGS+ ++R D + +N+ +ADT++ + DWNP D QA RAHRLGQK V ++R + +G++EE++ S+ + K+ + + V+ A + SM +L +LF E P +G Sbjct: 955 GGHRVLIFSQMTMMLDILEDFC---DVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDVLRWGTEELFKEEEAPVEG 1127
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17 Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1 Query: 106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 + G HR LIF Q LD++E+ L ++ YLRLDG+ + E+R + FN+D I A ADT++F + DWNP D Q DR HR+GQ + VH++R + T+E ++ K + + VI Sbjct: 1343 LKAGGHRALIFTQMTKMLDVLEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVI 1479
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 + G HR LIF Q LDI+E+ L ++ YLRLDG+ + E+R + FN+D I ADT++F + DWNP D Q DR HR+GQ + VH++R + T+E ++ K + + VI Sbjct: 1390 LKAGGHRALIFTQMTKMLDILEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVI 1526
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 65/211 (30.81%), Postives = 101/211 (47.87%), Query Frame = 1 Query: 4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN----AENASMKTMNTGQLLDL--------FASAET 597 ++ H +++S K+ L +++ + + GS R+LIF+Q LDI+E H ++ Y RLDG E R ++ FN D + +AD ++ + DWNP D QAMDRAHR+GQKK V V RLI T+EEK++ K+ + VI +N S +N ++L++ F+S ET Sbjct: 422 TDTHLVYNSGKMAILDKLLPK--LQEQGS-----------RVLIFSQMTRMLDILED---YCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRS-NQLNKDEMLNIIRFGANQVFSSKET 615
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564 +R+LIF+Q LDI+ L + + RLDGS++ E R + FN++ + D SADT+V + DWNP D QA RAHR+GQKK V+++RL+ +G++EE ++ + K+ + + VI + + KT ++TG Sbjct: 803 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 949 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |