FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564 +R+LIF+Q LDI+ L + + RLDGS++ E R + FN++ + D SADT+V + DWNP D QA RAHR+GQKK V+++RL+ +G++EE ++ + K+ + + VI + + KT ++TG Sbjct: 805 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 951
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564 +R+LIF+Q LDI+ L + + RLDGS++ E R + FN++ + D SADT+V + DWNP D QA RAHR+GQKK V+++RL+ +G++EE ++ + K+ + + VI + + KT ++TG Sbjct: 801 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 947
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17 Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVM 483 +HR LIF Q LD+++ F +H Y RLDG+ E+R +++ FN+DP + ADT++F + DWNP D QA DR HR+GQ + V ++RLI T+EE ++ Sbjct: 1204 KHRCLIFTQMSKMLDVLQT--FLSH-HGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENIL 1322
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17 Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQ 567 HR+LIF Q +DI+E L ++K YLRLDG +S+ R ++++ FN+ D +ADT++ + DWNP +D QA DRAHR+GQK V + RLI ++EE ++ K+ I VI A K+ + Q Sbjct: 1104 HRVLIFFQMTQIMDIMEDFLRYINIK---YLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17 Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 R+L+F+Q + LDI+E L + TYL++DG+ R ++ +N D +I A+ +V + DWNP D QA +RA R+GQKK V V+RL+ GT+EEK+ Q FK + N V+ + + + L +LF Sbjct: 857 RVLLFSQSRQMLDILEVFL---RAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELF 1005
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16 Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 1 Query: 13 HKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMK 549 H ++++ KL L +++ + + +GS R+LIF+Q LDI+E + ++ Y R+DGS E R + +N+ D SAD +V + DWNP D QAMDRAHR+GQKK V V RL+ ++EEK++ K+ + VI S+K Sbjct: 496 HLVYNAAKLQVLDKLLKK--LKEEGS-----------RVLIFSQMSRLLDILED---YCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLK 659
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16 Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 HR+L+F Q + + I+E D F ++ YLRLDG+ +SE R ++K FN + +ADT+V + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1072 HRVLLFCQMTSLMTIME-DYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16 Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 HR+L+F Q + + I+E D F ++ YLRLDG+ +SE R ++K FN + +ADT+V + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1067 HRVLLFCQMTSLMTIME-DYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16 Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN 528 HR+LIF+Q LDI+ L +K + + RLDG+V S +R + FNS + D +ADT+V + DWNP D QAM RAHR+GQK V V+RL+ + T+EE+V+ R K+ + +I+ Sbjct: 712 HRVLIFSQMVRMLDILGDYL---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16 Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI------NAENASMKTMNTGQLLDLFA 585 + ++++ + + LDIIE + +M +++ RLDGS+ +++R IV +FN +P I L+ ++DWNP D QAM R HR GQKK ++RL+ G ++EK++ Q K S++ + N E+++ N L DLF+ Sbjct: 647 KEKVVVVSNYTQTLDIIENLM---NMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFS 805 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |