FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564
            +R+LIF+Q    LDI+   L     +   + RLDGS++ E R   +  FN++ + D                 SADT+V  + DWNP  D QA  RAHR+GQKK V+++RL+ +G++EE ++   + K+ + + VI   + + KT ++TG
Sbjct:  805 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 951          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT-MNTG 564
            +R+LIF+Q    LDI+   L     +   + RLDGS++ E R   +  FN++ + D                 SADT+V  + DWNP  D QA  RAHR+GQKK V+++RL+ +G++EE ++   + K+ + + VI   + + KT ++TG
Sbjct:  801 NRVLIFSQMVRMLDILAEYL---KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG 947          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVM 483
            +HR LIF Q    LD+++   F +H     Y RLDG+   E+R  +++ FN+DP +                  ADT++F + DWNP  D QA DR HR+GQ + V ++RLI   T+EE ++
Sbjct: 1204 KHRCLIFTQMSKMLDVLQT--FLSH-HGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENIL 1322          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQ 567
            HR+LIF Q    +DI+E  L   ++K   YLRLDG  +S+ R ++++ FN+ D                    +ADT++  + DWNP +D QA DRAHR+GQK  V + RLI   ++EE ++     K+ I   VI A     K+ +  Q
Sbjct: 1104 HRVLIFFQMTQIMDIMEDFLRYINIK---YLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            R+L+F+Q +  LDI+E  L     +  TYL++DG+     R  ++  +N D +I                  A+ +V  + DWNP  D QA +RA R+GQKK V V+RL+  GT+EEK+   Q FK  + N V+  +    +   +  L +LF
Sbjct:  857 RVLLFSQSRQMLDILEVFL---RAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELF 1005          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 1
Query:   13 HKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMK 549
            H ++++ KL  L +++ +  +  +GS           R+LIF+Q    LDI+E      + ++  Y R+DGS   E R   +  +N+ D                    SAD +V  + DWNP  D QAMDRAHR+GQKK V V RL+   ++EEK++     K+ +   VI     S+K
Sbjct:  496 HLVYNAAKLQVLDKLLKK--LKEEGS-----------RVLIFSQMSRLLDILED---YCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLK 659          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            HR+L+F Q  + + I+E D F    ++  YLRLDG+ +SE R  ++K FN   +                   +ADT+V  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1072 HRVLLFCQMTSLMTIME-DYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            HR+L+F Q  + + I+E D F    ++  YLRLDG+ +SE R  ++K FN   +                   +ADT+V  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1067 HRVLLFCQMTSLMTIME-DYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVIN 528
            HR+LIF+Q    LDI+   L    +K + + RLDG+V S +R   +  FNS  + D                 +ADT+V  + DWNP  D QAM RAHR+GQK  V V+RL+ + T+EE+V+   R K+ +   +I+
Sbjct:  712 HRVLIFSQMVRMLDILGDYL---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  118 QHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI------NAENASMKTMNTGQLLDLFA 585
            + ++++ + +   LDIIE  +   +M  +++ RLDGS+ +++R  IV +FN +P I                     L+  ++DWNP  D QAM R HR GQKK   ++RL+  G ++EK++  Q  K S++   +      N E+++    N   L DLF+
Sbjct:  647 KEKVVVVSNYTQTLDIIENLM---NMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFS 805          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CHD1_HUMAN6.534e-1734.67Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
CHD1_CHICK6.534e-1734.67Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
SSL1_CAEEL8.534e-1736.89Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]
SNF2_YEAST8.534e-1735.33Transcription regulatory protein SNF2 OS=Saccharom... [more]
ERCC6_HUMAN8.534e-1733.33DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
ISW1_YEAST1.115e-1631.67ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
SMCA2_MOUSE1.456e-1636.23Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN1.456e-1636.23Probable global transcription activator SNF2L2 OS=... [more]
CHD1_YEAST1.456e-1637.96Chromo domain-containing protein 1 OS=Saccharomyce... [more]
RDH54_YEAST1.901e-1630.25DNA repair and recombination protein RDH54 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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