FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16 Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV---ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQ 567 HR+LI+ Q + LD++E + TH K Y R+DG V E + R D A NS+ +ADT++ + DWNP D QAM RAHRLGQ V ++RLI RGT+EE++M L + K+ + + V+ +KT N Q Sbjct: 612 HRVLIYTQFQHMLDLLED--YCTH-KKWQYERIDGKVGGAERQIRIDRFNAKNSNKF--CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV----GKLKTQNINQ 754
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16 Identity = 47/158 (29.75%), Postives = 84/158 (53.16%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594 ++++ + + LD+ E+ ++ Y+RLDG++ ++R +V+ FNS + D A+ LV + DWNP D QAM R R GQKK+ +++RL+ GT+EEK+ Q K ++++ V++ E + + G+L +LF E Sbjct: 515 KVVLVSNYTQTLDLFEK---LCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16 Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 1 Query: 25 HSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENA 540 +S K+ LQ++++ C D ++L+F+ LD++++ + + Y RLDGS +SE R IVK FNS ++ A+ +V + WNP D QA+DRA+R+GQ + V V RLI GT+EE + Q +K + V+ +ENA Sbjct: 517 YSGKMKVLQQLLNHCRKNRD-------------KVLLFSFSTKLLDVLQQYCMAS---GLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENA 672
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16 Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 HR+L+F Q + IIE L + YLRLDG+ ++E R ++++ FN+ + + +ADT+V + DWNP +D QA DRAHR+GQ+ V V RL+ ++EE++++ R+K+++ VI A Sbjct: 1115 HRVLLFCQMTQCMTIIEDYL---GWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16 Identity = 54/153 (35.29%), Postives = 76/153 (49.67%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDL 579 HR+L+F+Q LDI++ L + +Y R+DGSV E R +K F P I +ADT++F + D+NP D QA RAHR+GQ K V V RLI R T+EE V K+ + NT+I + ++ DL Sbjct: 366 HRVLLFSQMTQMLDILQDYL---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPAADADL 514
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16 Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 H+ L+F Q + I+E L + K YLRLDGS +S+ R ++ FN DP D +ADT++ + DWNP +D QA DRAHR+GQ K V + RLI ++EE ++S ++K+ + VI A Sbjct: 1204 HKTLMFFQMTQIMTIMEDYLRSKNWK---YLRLDGSTKSDDRCSLLAQFN-DPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQA 1338
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16 Identity = 59/172 (34.30%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 13 HKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 H + +S K+VAL +++ I GS R+LIF+Q LDI+E + Y RLDG E R + + AFN+ + SAD ++ + DWNP D QAMDRAHR+GQKK V V RLI T+EE+++ K+ + + VI Sbjct: 484 HIVGNSGKMVALDKLLAR--IKEQGS-----------RVLIFSQMTRLLDILEDYCM---WRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 639
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16 Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555 HR+LIF+Q LDI+ L + H + RLDGS++ E R + FN++ + D +ADT++ + DWNP D QA RAHR+GQK V+++RL+ ++EE ++ + K+ + + VI + + KT+ Sbjct: 531 HRVLIFSQMVRMLDILAEYLQRRHFP---FQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVERAKRKMVLDHLVIQRMDTTGKTV 673
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 H++L+F Q + + I+E D F + YLRLDG+ ++E R ++K FN + SADT++ + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 H++L+F Q + + I+E D F + YLRLDG+ ++E R ++K FN + SADT++ + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |