FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV---ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQ 567
            HR+LI+ Q +  LD++E   + TH K   Y R+DG V   E + R D   A NS+                    +ADT++  + DWNP  D QAM RAHRLGQ   V ++RLI RGT+EE++M L + K+ + + V+      +KT N  Q
Sbjct:  612 HRVLIYTQFQHMLDLLED--YCTH-KKWQYERIDGKVGGAERQIRIDRFNAKNSNKF--CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV----GKLKTQNINQ 754          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 47/158 (29.75%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            ++++ + +   LD+ E+      ++   Y+RLDG++  ++R  +V+ FNS  + D                  A+ LV  + DWNP  D QAM R  R GQKK+ +++RL+  GT+EEK+   Q  K ++++ V++ E    +  + G+L +LF   E
Sbjct:  515 KVVLVSNYTQTLDLFEK---LCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   25 HSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENA 540
            +S K+  LQ++++ C    D             ++L+F+     LD++++    +    + Y RLDGS +SE R  IVK FNS   ++                 A+ +V  +  WNP  D QA+DRA+R+GQ + V V RLI  GT+EE +   Q +K  +   V+ +ENA
Sbjct:  517 YSGKMKVLQQLLNHCRKNRD-------------KVLLFSFSTKLLDVLQQYCMAS---GLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENA 672          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            HR+L+F Q    + IIE  L     +   YLRLDG+ ++E R ++++ FN+  + +                 +ADT+V  + DWNP +D QA DRAHR+GQ+  V V RL+   ++EE++++  R+K+++   VI A
Sbjct: 1115 HRVLLFCQMTQCMTIIEDYL---GWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 54/153 (35.29%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDL 579
            HR+L+F+Q    LDI++  L     +  +Y R+DGSV  E R   +K F   P I                 +ADT++F + D+NP  D QA  RAHR+GQ K V V RLI R T+EE V      K+ + NT+I   + ++         DL
Sbjct:  366 HRVLLFSQMTQMLDILQDYL---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPAADADL 514          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            H+ L+F Q    + I+E  L   + K   YLRLDGS +S+ R  ++  FN DP  D                  +ADT++  + DWNP +D QA DRAHR+GQ K V + RLI   ++EE ++S  ++K+ +   VI A
Sbjct: 1204 HKTLMFFQMTQIMTIMEDYLRSKNWK---YLRLDGSTKSDDRCSLLAQFN-DPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQA 1338          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 59/172 (34.30%), Postives = 84/172 (48.84%), Query Frame = 1
Query:   13 HKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            H + +S K+VAL +++    I   GS           R+LIF+Q    LDI+E        +   Y RLDG    E R + + AFN+  +                   SAD ++  + DWNP  D QAMDRAHR+GQKK V V RLI   T+EE+++     K+ + + VI
Sbjct:  484 HIVGNSGKMVALDKLLAR--IKEQGS-----------RVLIFSQMTRLLDILEDYCM---WRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 639          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555
            HR+LIF+Q    LDI+   L + H     + RLDGS++ E R   +  FN++ + D                 +ADT++  + DWNP  D QA  RAHR+GQK  V+++RL+   ++EE ++   + K+ + + VI   + + KT+
Sbjct:  531 HRVLIFSQMVRMLDILAEYLQRRHFP---FQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVERAKRKMVLDHLVIQRMDTTGKTV 673          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            H++L+F Q  + + I+E D F    +   YLRLDG+ ++E R  ++K FN   +                   SADT++  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            H++L+F Q  + + I+E D F    +   YLRLDG+ ++E R  ++K FN   +                   SADT++  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PKL_ARATH1.901e-1637.50CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
RAD54_MOUSE2.483e-1629.75DNA repair and recombination protein RAD54-like OS... [more]
RAD26_HUMAN2.483e-1631.40Putative DNA repair and recombination protein RAD2... [more]
BRM_DROME2.483e-1634.78ATP-dependent helicase brm OS=Drosophila melanogas... [more]
CHD1L_BOVIN4.235e-1635.29Chromodomain-helicase-DNA-binding protein 1-like O... [more]
SNF22_SCHPO5.532e-1636.69SWI/SNF chromatin-remodeling complex subunit snf22... [more]
SMCA1_MOUSE7.224e-1634.30Probable global transcription activator SNF2L1 OS=... [more]
CHD1_BOMMO7.224e-1632.88Chromodomain-helicase-DNA-binding protein 1 OS=Bom... [more]
SMCA4_RAT9.435e-1634.78Transcription activator BRG1 OS=Rattus norvegicus ... [more]
SMCA4_MOUSE9.435e-1634.78Transcription activator BRG1 OS=Mus musculus GN=Sm... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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