FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            H++L+F Q  + + I+E D F    +   YLRLDG+ ++E R  ++K FN   +                   SADT++  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531
            H++L+F Q  + + I+E D F    +   YLRLDG+ ++E R  ++K FN   +                   SADT++  + DWNP +D QA DRAHR+GQ+  V V RL    ++EEK+++  ++K+++   VI A
Sbjct: 1089 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597
            ++++ + +   LD+ E+       +   Y+RLDG++  ++R  +V+ FNS  + +                  A+ LV  + DWNP  D QAM R  R GQKK  +++RL+  GT+EEK+   Q  K ++++ V++ E    +  + G+L +LF+  ET
Sbjct:  504 KVVLVSNYTQTLDLFEK---LCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNET 659          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            G HR+L+F+Q    LDI++  +     +  +Y R+DGSV  E R   +K F + P I                 +ADT++F++ D+NP  D QA  RAHR+GQ K V V RLI R T+EE V      K+ + N VI
Sbjct:  356 GGHRVLLFSQMTHMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVI 488          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_HUMAN (Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 53/155 (34.19%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDL 579
            G HR+L+F+Q    LDI++  +     +  +Y R+DGSV  E R   +K F   P I                 +ADT++F++ D+NP  D QA  RAHR+GQ K V V RLI R T+EE V      K+ + N +I   + ++         DL
Sbjct:  362 GGHRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADL 512          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            G  + +I +Q  + L ++   L +  +   TY  +DGSV  ++R D+V+AFN                        + L  ++  WNP  + QA DR +R+GQKK V +HR +  GT+EEK++ LQ  K  +A  V++     +  +    L  LF
Sbjct:  984 GSQKSVIVSQWTSMLQVVALHLKKNRL---TYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLTLADLKILF 1136          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            ++++ + +   LD+ E+       +   Y+RLDG++  ++R  +V+ FNS  + D                  A+ LV  + DWNP  D QAM R  R GQKK  +++RL+  GT+EEK+   Q  K ++++ V++ E    +  + G+L +LF
Sbjct:  515 KVVLVSNYTQTLDLFEK---LCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELF 665          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID--AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT 552
            HR+L+F+Q    L+++E  L     +   Y R+DGS++ + R   +  FN DP  +                  +ADT++  + DWNP  D QA  RAHR+GQKK V ++R +   ++EE++M + + K+ + + V+      M T
Sbjct:  603 HRVLLFSQMTKMLNVLEHFL---EGEGYQYDRIDGSIKGDLRQKAIDRFN-DPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTT 744          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555
            HR+LIF+Q    LD++   L + H     + RLDGS++ E R   +  FN++ + D                 +ADT++  + DWNP  D QA  RAHR+GQK  V+++RL+   ++EE+++   + K+ + + VI   + + +T+
Sbjct:  853 HRVLIFSQMVRMLDVLADYLQKRHFP---FQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTV 995          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENA 540
            ++L+F+     LD++++    +    + Y RLDGS +SE R  IVK FNS   ++                 A+ ++  +  WNP  D QA+DRA+R+GQ + V V RLI  GT+EE +   Q +K  +   V+ +ENA
Sbjct:  524 KVLLFSFSTKLLDVLQQYCMAS---GLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENA 659          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
SMCA4_HUMAN9.435e-1634.78Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]
SMCA4_BOVIN9.435e-1634.78Transcription activator BRG1 OS=Bos taurus GN=SMAR... [more]
RAD54_CHICK9.435e-1629.56DNA repair and recombination protein RAD54-like (F... [more]
CHD1L_MOUSE9.435e-1637.96Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD1L_HUMAN9.435e-1634.19Chromodomain-helicase-DNA-binding protein 1-like O... [more]
TTF2_MOUSE1.232e-1529.49Transcription termination factor 2 OS=Mus musculus... [more]
RAD54_HUMAN1.232e-1529.87DNA repair and recombination protein RAD54-like OS... [more]
CHD3_DROME1.609e-1530.82Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
CHD1_DROME1.609e-1531.51Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
RAD26_MOUSE2.102e-1533.81Putative DNA repair and recombination protein RAD2... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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