FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 H++L+F Q + + I+E D F + YLRLDG+ ++E R ++K FN + SADT++ + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1097 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPT-IDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINA 531 H++L+F Q + + I+E D F + YLRLDG+ ++E R ++K FN + SADT++ + DWNP +D QA DRAHR+GQ+ V V RL ++EEK+++ ++K+++ VI A Sbjct: 1089 HKVLLFCQMTSLMTIME-DYFA--YRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597 ++++ + + LD+ E+ + Y+RLDG++ ++R +V+ FNS + + A+ LV + DWNP D QAM R R GQKK +++RL+ GT+EEK+ Q K ++++ V++ E + + G+L +LF+ ET Sbjct: 504 KVVLVSNYTQTLDLFEK---LCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNET 659
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 G HR+L+F+Q LDI++ + + +Y R+DGSV E R +K F + P I +ADT++F++ D+NP D QA RAHR+GQ K V V RLI R T+EE V K+ + N VI Sbjct: 356 GGHRVLLFSQMTHMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVI 488
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1L_HUMAN (Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 53/155 (34.19%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDL 579 G HR+L+F+Q LDI++ + + +Y R+DGSV E R +K F P I +ADT++F++ D+NP D QA RAHR+GQ K V V RLI R T+EE V K+ + N +I + ++ DL Sbjct: 362 GGHRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADL 512
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15 Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 G + +I +Q + L ++ L + + TY +DGSV ++R D+V+AFN + L ++ WNP + QA DR +R+GQKK V +HR + GT+EEK++ LQ K +A V++ + + L LF Sbjct: 984 GSQKSVIVSQWTSMLQVVALHLKKNRL---TYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLTLADLKILF 1136
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15 Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 ++++ + + LD+ E+ + Y+RLDG++ ++R +V+ FNS + D A+ LV + DWNP D QAM R R GQKK +++RL+ GT+EEK+ Q K ++++ V++ E + + G+L +LF Sbjct: 515 KVVLVSNYTQTLDLFEK---LCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELF 665
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15 Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID--AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKT 552 HR+L+F+Q L+++E L + Y R+DGS++ + R + FN DP + +ADT++ + DWNP D QA RAHR+GQKK V ++R + ++EE++M + + K+ + + V+ M T Sbjct: 603 HRVLLFSQMTKMLNVLEHFL---EGEGYQYDRIDGSIKGDLRQKAIDRFN-DPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTT 744
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15 Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTM 555 HR+LIF+Q LD++ L + H + RLDGS++ E R + FN++ + D +ADT++ + DWNP D QA RAHR+GQK V+++RL+ ++EE+++ + K+ + + VI + + +T+ Sbjct: 853 HRVLIFSQMVRMLDVLADYLQKRHFP---FQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTV 995
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15 Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENA 540 ++L+F+ LD++++ + + Y RLDGS +SE R IVK FNS ++ A+ ++ + WNP D QA+DRA+R+GQ + V V RLI GT+EE + Q +K + V+ +ENA Sbjct: 524 KVLLFSFSTKLLDVLQQYCMAS---GLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENA 659 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |