FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = 1
Query:    4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +++H + +S K+V L +++ +  +   GS           R+LIF+Q    LDI+E        ++  Y RLDG    + R D + A+N  + T                  +AD ++  + DWNP  D QAMDRAHR+GQ K V V R I   T+EE+++     K+ + + VI
Sbjct:  473 TDMHLVTNSGKMVVLDKLLPK--LKEQGS-----------RVLIFSQMTRVLDILEDYCM---WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = 1
Query:    4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +++H + +S K+V L +++ +  +   GS           R+LIF+Q    LDI+E        ++  Y RLDG    + R D + A+N  + T                  +AD ++  + DWNP  D QAMDRAHR+GQ K V V R I   T+EE+++     K+ + + VI
Sbjct:  474 TDMHLVTNSGKMVVLDKLLPK--LKEQGS-----------RVLIFSQMTRVLDILEDYCM---WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLF--QTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFA 585
            ++ L+F Q +  LDI+E  +      +  + YLR+DG+   + R  +V  FN++ + D                 A+ ++  + DWNP  D QA +RA R+GQK+ V ++RL++ G++EEK+   Q FK  + N ++  +    +     +L DLF+
Sbjct:  668 YKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL-TDPKQKRFFKIHELHDLFS 822          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 55/154 (35.71%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI-NAENASMKTMNTGQLLDL 579
            R+LIF+Q    LDI+E  L     +   Y R+DG+   E R   ++AFN   +                   +AD +V  + DWNP  D QA DRAHR+GQKK V V R     T+EEKV+     K+++   VI     A  KT+N   LL +
Sbjct:  550 RVLIFSQMTRLLDILEDYLMY---RGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQM 700          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV----ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597
            HR LIF+Q +  LDI+ER L   + +    LRLDG+V    E E+R  +   F +D                     A+ +V  +  WNP  D QA+DRA+R+GQ + V ++RLI  GT+EEK+   Q FK S+       +    +  +  +L +LF   +T
Sbjct:  492 HRTLIFSQSRKMLDIMERVLRNRNFR---LLRLDGTVTQLAEREKRISL---FQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKLEDT 648          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV----ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            H+ L+F+Q +  L+IIER L   H K+   LR+DG+V    E E+R ++   F  +                    +A  +V  +  WNP  D QA+DR +R+GQK+ V V+RLI  GT+EEK+   Q FK S+       +    +  +  +L +LF
Sbjct:  477 HQTLVFSQSRQILNIIERLLKNRHFKT---LRIDGTVTHLLEREKRINL---FQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELF 628          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 61/214 (28.50%), Postives = 99/214 (46.26%), Query Frame = 1
Query:    7 ELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIER--DLFQTHMKSVT-----------------YLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFA 585
            EL+ +HHSPKL+ L  ++ +C    D             ++L+F+Q    LD+IE    L  ++ K+                   Y RLDGS   E+R  + K FN+   + A                 +A+ +V  +  WNP  D Q++ R +R GQ K  +++RLI  GT+E+KV   Q  K + A  VI+ +  S +  N   L++L++
Sbjct:  890 ELNNVHHSPKLLILLRLLQQCEAIGD-------------KLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQIS-RHYNQTDLMELYS 1089          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  190 HMKS--VTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            H+K   +TY  +DGSV  ++R D+V+AFN                        + L  ++  WNP  + QA DR +R+GQ+K V +HR +  GT+EEK++ LQ  K  +A  V++    S+  +    L  LF
Sbjct: 1028 HLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLF 1160          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI----NAENASMKTMNTGQLL-----DLFASAETPXKGGGVSK 624
            G HR+LIF+Q    LD++E  L     K   Y R+DG +    R + +  FN+                      +ADT++  + DWNP  D QA  RAHR+GQ K V ++R + R ++EE++  + + K+ + + V+     ++  SM       +L     +LF    T   GGG +K
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYK---YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEAT--DGGGDNK 1232          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI----NAENASMKTMNTGQLL-----DLFASAETPXKGGGVSK 624
            G HR+LIF+Q    LD++E  L     K   Y R+DG +    R + +  FN+                      +ADT++  + DWNP  D QA  RAHR+GQ K V ++R + R ++EE++  + + K+ + + V+     ++  SM       +L     +LF    T   GGG +K
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYK---YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEAT--DGGGDNK 1239          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
SMCA5_MOUSE3.585e-1530.86SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_HUMAN3.585e-1530.86SWI/SNF-related matrix-associated actin-dependent ... [more]
RAD26_YEAST4.683e-1529.30DNA repair and recombination protein RAD26 OS=Sacc... [more]
ISW2_ORYSJ4.683e-1535.71Probable chromatin-remodeling complex ATPase chain... [more]
ERC6L_DANRE6.116e-1533.13DNA excision repair protein ERCC-6-like OS=Danio r... [more]
ERC6L_HUMAN7.988e-1532.91DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
ATRX_DROME7.988e-1528.50Transcriptional regulator ATRX homolog OS=Drosophi... [more]
TTF2_HUMAN1.043e-1432.33Transcription termination factor 2 OS=Homo sapiens... [more]
CHD4_MOUSE1.043e-1429.44Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN1.043e-1429.44Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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