FC923454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15 Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = 1 Query: 4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 +++H + +S K+V L +++ + + GS R+LIF+Q LDI+E ++ Y RLDG + R D + A+N + T +AD ++ + DWNP D QAMDRAHR+GQ K V V R I T+EE+++ K+ + + VI Sbjct: 473 TDMHLVTNSGKMVVLDKLLPK--LKEQGS-----------RVLIFSQMTRVLDILEDYCM---WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15 Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = 1 Query: 4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNS-DPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525 +++H + +S K+V L +++ + + GS R+LIF+Q LDI+E ++ Y RLDG + R D + A+N + T +AD ++ + DWNP D QAMDRAHR+GQ K V V R I T+EE+++ K+ + + VI Sbjct: 474 TDMHLVTNSGKMVVLDKLLPK--LKEQGS-----------RVLIFSQMTRVLDILEDYCM---WRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15 Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLF--QTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFA 585 ++ L+F Q + LDI+E + + + YLR+DG+ + R +V FN++ + D A+ ++ + DWNP D QA +RA R+GQK+ V ++RL++ G++EEK+ Q FK + N ++ + + +L DLF+ Sbjct: 668 YKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL-TDPKQKRFFKIHELHDLFS 822
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15 Identity = 55/154 (35.71%), Postives = 75/154 (48.70%), Query Frame = 1 Query: 124 RILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI-NAENASMKTMNTGQLLDL 579 R+LIF+Q LDI+E L + Y R+DG+ E R ++AFN + +AD +V + DWNP D QA DRAHR+GQKK V V R T+EEKV+ K+++ VI A KT+N LL + Sbjct: 550 RVLIFSQMTRLLDILEDYLMY---RGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQM 700
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15 Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV----ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAET 597 HR LIF+Q + LDI+ER L + + LRLDG+V E E+R + F +D A+ +V + WNP D QA+DRA+R+GQ + V ++RLI GT+EEK+ Q FK S+ + + + +L +LF +T Sbjct: 492 HRTLIFSQSRKMLDIMERVLRNRNFR---LLRLDGTVTQLAEREKRISL---FQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKLEDT 648
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15 Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 1 Query: 121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSV----ESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 H+ L+F+Q + L+IIER L H K+ LR+DG+V E E+R ++ F + +A +V + WNP D QA+DR +R+GQK+ V V+RLI GT+EEK+ Q FK S+ + + + +L +LF Sbjct: 477 HQTLVFSQSRQILNIIERLLKNRHFKT---LRIDGTVTHLLEREKRINL---FQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELF 628
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15 Identity = 61/214 (28.50%), Postives = 99/214 (46.26%), Query Frame = 1 Query: 7 ELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVNVGQHRILIFAQHKAFLDIIER--DLFQTHMKSVT-----------------YLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXX--SADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFA 585 EL+ +HHSPKL+ L ++ +C D ++L+F+Q LD+IE L ++ K+ Y RLDGS E+R + K FN+ + A +A+ +V + WNP D Q++ R +R GQ K +++RLI GT+E+KV Q K + A VI+ + S + N L++L++ Sbjct: 890 ELNNVHHSPKLLILLRLLQQCEAIGD-------------KLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQIS-RHYNQTDLMELYS 1089
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1 Query: 190 HMKS--VTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582 H+K +TY +DGSV ++R D+V+AFN + L ++ WNP + QA DR +R+GQ+K V +HR + GT+EEK++ LQ K +A V++ S+ + L LF Sbjct: 1028 HLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLF 1160
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI----NAENASMKTMNTGQLL-----DLFASAETPXKGGGVSK 624 G HR+LIF+Q LD++E L K Y R+DG + R + + FN+ +ADT++ + DWNP D QA RAHR+GQ K V ++R + R ++EE++ + + K+ + + V+ ++ SM +L +LF T GGG +K Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYK---YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEAT--DGGGDNK 1232
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 1 Query: 115 GQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTID-AXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI----NAENASMKTMNTGQLL-----DLFASAETPXKGGGVSK 624 G HR+LIF+Q LD++E L K Y R+DG + R + + FN+ +ADT++ + DWNP D QA RAHR+GQ K V ++R + R ++EE++ + + K+ + + V+ ++ SM +L +LF T GGG +K Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYK---YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEAT--DGGGDNK 1239 The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bpback to top |