FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.270e-42
Identity = 74/146 (50.68%), Postives = 111/146 (76.03%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +VV  E  +  A+++G  F
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.270e-42
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISFH 555
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D    + V  E  +  A E G+ F+
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFY 148          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.331e-42
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            + EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  +T + +GK +K QIWDTAGQER+R ITS+YYRGA G +++YDVT   +F N  +WL E+  +   N+  +L+GNKCDL     V  E AKAFA+   + F
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYF 152          

HSP 2 Score: 36.965 bits (84), Expect = 1.331e-42
Identity = 21/64 (32.81%), Postives = 29/64 (45.31%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS--------GCCS 718
            FMETSA  ATNVE AF  +   I   ++ +          +  +G+ +N K         GCCS
Sbjct:  152 FMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.735e-42
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT  + V+ E  + FA E G+ F
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIF 145          

HSP 2 Score: 30.4166 bits (67), Expect = 1.735e-42
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  542 GFPFMETSAKSATNVEQAFMAMAASIKNRM 631
            G  F+ETSA++A NVE+AF+  A  I  ++
Sbjct:  142 GLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.166e-42
Identity = 76/148 (51.35%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISFH 555
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T++ DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D    + V  E  +  A E G+ F+
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFY 148          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.260e-42
Identity = 73/144 (50.69%), Postives = 105/144 (72.92%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 546
            + +YD+LFKL+L+GD+ VGK+C++ RF   ++ E   STIGVDF ++T+E  GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GNK DL+  + VS   A++ A+   I
Sbjct:   12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI 155          

HSP 2 Score: 35.039 bits (79), Expect = 2.260e-42
Identity = 17/53 (32.08%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  554 METSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGC 712
            +ETSAK ++NVE+AF+ +A  +  R    P  +   P  +Q+  + + +  GC
Sbjct:  159 IETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 210          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.000e-42
Identity = 78/146 (53.42%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV+ WL E+  +   N+  +LVGNK DL     V  E AK+FA++  + F
Sbjct:    7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYF 152          

HSP 2 Score: 37.7354 bits (86), Expect = 5.000e-42
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIK---NRMASQPASNNARPPTVQIR---GQPVN--QKSGCCS 718
            FMETSA  ATNVE AF  +   I    ++ A + AS +A  P+   +   G+ V+  +K GCCS
Sbjct:  152 FMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.515e-42
Identity = 77/143 (53.85%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL + + V  E  +AFA E G+ F
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIF 145          

HSP 2 Score: 33.8834 bits (76), Expect = 6.515e-42
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 2
Query:  542 GFPFMETSAKSATNVEQAFMAMAASIKNRM-----------------ASQPASNNARPPTVQIRGQPVNQKSGCC 715
            G  FMETSAK+A NVE+A++  A  I  ++                   Q  +++  P + Q     +   SGCC
Sbjct:  142 GLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.441e-41
Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  118 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD 534
            ++YDYLFKL+LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G +VVYD+T   +F NV++WL E+  +  +N+  +LVGNK DL   + VS E AKAFA+
Sbjct:    9 DDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAE 147          

HSP 2 Score: 33.113 bits (74), Expect = 1.441e-41
Identity = 22/66 (33.33%), Postives = 31/66 (46.97%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN---------QKSGCCST 721
            FMETSA  + NVE AF  +   I  ++  + A      P    +GQ +N         +K GCCS+
Sbjct:  153 FMETSALESLNVENAFTEVLTEI-YKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.447e-41
Identity = 71/144 (49.31%), Postives = 105/144 (72.92%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 546
            +  +DYLFK++LIGDS VGK+C++  F    Y E+  +TIGVDF +R+++ DGK +K+Q+WDTAGQERFRTIT SYYR AH  I+ YD+T + +F ++  W++EI++Y + NV  +L+GNKCDL   + V +E A   A++ G+
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGL 154          

HSP 2 Score: 26.5646 bits (57), Expect = 2.447e-41
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  554 METSAKSATNVEQAFMAMAASI 619
            +ETSAK + N+E+ F+ MA  +
Sbjct:  158 LETSAKESKNIEEVFVLMAKEL 179          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_HUMAN1.270e-4250.68Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB15_BOVIN1.270e-4252.03Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAA1A_ARATH1.331e-4252.74Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPTV4_VOLCA1.735e-4253.85GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB15_MOUSE2.166e-4251.35Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB43_HUMAN2.260e-4250.69Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAA1C_ARATH5.000e-4253.42Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAB2B_MOUSE6.515e-4253.85Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RB11B_TOBAC1.441e-4156.12Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAB19_HUMAN2.447e-4149.31Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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