FC925453 | Citrus Genome Database

Overview


Name	FC925453
Unique Name	FC925453
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	762

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 8.642e-100
Identity = 133/147 (90.48%), Postives = 141/147 (95.92%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVGNK DLT N+ + YETAKAFADEIGI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPF 147

HSP 2 Score: 111.309 bits (277), Expect = 8.642e-100
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 2

Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST 721
            ++G PFMETSAK ATNVEQAFMAM+ASIK RMASQPA NNARPPTVQIRGQPV QK+GCCST
Sbjct:  142 EIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.128e-99
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLTANKVV+ ETAKAFADE+GI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPF 147

HSP 2 Score: 105.531 bits (262), Expect = 1.128e-99
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 2

Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST 721
            ++G PFMETSAK+ATNV+QAFMAMAASIK+RMASQPA+ NARP TVQIRGQPVNQK+ CCS+
Sbjct:  142 EMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCSS 203

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.480e-96
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  N+VVSYE  KA ADEIGI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPF 147

HSP 2 Score: 93.5893 bits (231), Expect = 1.480e-96
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2

Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 718
            ++G PF+ETSAK ATNVE+AFM MA  IKNRMASQPA+N ++P TVQ+RGQPV Q+S CCS
Sbjct:  142 EIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.788e-88
Identity = 135/147 (91.84%), Postives = 137/147 (93.20%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK DLT+ KVV Y  AKAFADEIGI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPF 147

HSP 2 Score: 76.2554 bits (186), Expect = 1.788e-88
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 2

Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR-GQPVNQKSGCC 715
            ++G PF+ETSAK+ATNVEQAFM MAA IKNRMASQP    A  P V+ + G+P+N KS  C
Sbjct:  142 EIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSC 202

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.342e-87
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT  KVV Y+ AKAFADEIGI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPF 147

HSP 2 Score: 74.3294 bits (181), Expect = 4.342e-87
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2

Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ-IRGQPVNQKSGCC 715
            ++G PF+ETSAK+ATNVEQAFM MAA IKNRMASQP       P V+   G+P+N KS  C
Sbjct:  142 EIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKPINNKSSSC 202

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.340e-85
Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1

Query:  106 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GI F
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 150

HSP 2 Score: 65.4698 bits (158), Expect = 2.340e-85
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:  146 LGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.340e-85
Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1

Query:  106 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GI F
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 150

HSP 2 Score: 65.4698 bits (158), Expect = 2.340e-85
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:  146 LGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.340e-85
Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1

Query:  106 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GI F
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 150

HSP 2 Score: 65.4698 bits (158), Expect = 2.340e-85
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:  146 LGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.340e-85
Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1

Query:  106 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GI F
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 150

HSP 2 Score: 65.4698 bits (158), Expect = 2.340e-85
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2

Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:  146 LGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 8.837e-85
Identity = 133/147 (90.48%), Postives = 136/147 (92.52%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 147

HSP 2 Score: 64.3142 bits (155), Expect = 8.837e-85
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 2

Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQAFM MAA IK RM     S  +    V I+  PV    G C
Sbjct:  143 LGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201

The following BLAST results are available for this feature:

BLAST of FC925453 vs. ExPASy Swiss-Prot

BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RBD2A_ARATH	8.642e-100	90.48	Ras-related protein RABD2A OS=Arabidopsis thaliana...	[more]
YPTM2_MAIZE	1.128e-99	93.88	GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=...	[more]
RIC1_ORYSJ	1.480e-96	94.56	Ras-related protein RIC1 OS=Oryza sativa subsp. ja...	[more]
YPTC1_CHLRE	1.788e-88	91.84	GTP-binding protein YPTC1 OS=Chlamydomonas reinhar...	[more]
YPTV1_VOLCA	4.342e-87	91.16	GTP-binding protein yptV1 OS=Volvox carteri GN=YPT...	[more]
RAB1A_RAT	2.340e-85	89.26	Ras-related protein Rab-1A OS=Rattus norvegicus GN...	[more]
RAB1A_MOUSE	2.340e-85	89.26	Ras-related protein Rab-1A OS=Mus musculus GN=Rab1...	[more]
RAB1A_HUMAN	2.340e-85	89.26	Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1...	[more]
RAB1A_CANFA	2.340e-85	89.26	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
RAB1_DISOM	8.837e-85	90.48	Ras-related protein ORAB-1 OS=Discopyge ommata PE=...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA