FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.204e-79
Identity = 124/147 (84.35%), Postives = 131/147 (89.12%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+T  KVV Y  AK FAD +GI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPF 147          

HSP 2 Score: 61.2326 bits (147), Expect = 5.204e-79
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCC 715
            LG PF+ETSAK+A+NVEQAF+ MA  IK RM S  A+NN +       G  V  N   GCC
Sbjct:  143 LGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 4.761e-77
Identity = 117/147 (79.59%), Postives = 133/147 (90.48%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M+NE+DYLFKLLLIGDS VGKSC LLRFADDSY++SYISTIGVDFKIRTVE +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL  N+ V    A+A+A E+GI F
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPF 147          

HSP 2 Score: 60.8474 bits (146), Expect = 4.761e-77
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQK----SGCCST 721
            ++G PF+ETSAK + NVE+AF+AM+A+IK   A   A+   +P   VQ++G+P+ Q+    S CCST
Sbjct:  142 EVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 1.378e-76
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN +Y YLFKLLLIGDSGVGKSCLLLRFADD+Y ES+ISTIGVDFKIRT+E +GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL A KVV + TAKAFAD + I F
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPF 147          

HSP 2 Score: 63.929 bits (154), Expect = 1.378e-76
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRM-ASQPASNNARPPTVQIRGQPVNQKSGCC 715
            L  PF+ETSAK +TNVEQAFM MA  IKNR+ ASQP     +   V     P++ KSGCC
Sbjct:  143 LQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 8.848e-76
Identity = 122/147 (82.99%), Postives = 128/147 (87.07%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN  YD LFKLLLIGDSGVGKSCLLLRFADD Y ESYISTIGVDFKI+T+E DGKTIKLQIWDTAGQERF TITSSYYRGAHG +VVYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT  KVV   TAK FAD +GI F
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPF 147          

HSP 2 Score: 61.6178 bits (148), Expect = 8.848e-76
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSAK+ATNVEQAFM MAA IK +M    AS   R P ++I   PV    G C
Sbjct:  143 LGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 5.679e-75
Identity = 121/147 (82.31%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+   KVV Y  AK FAD + I F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPF 147          

HSP 2 Score: 53.5286 bits (127), Expect = 5.679e-75
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 715
            L  PF+ETSAK +TNVEQAF+ M+  IK RM +   AS+NA+      +G  V+Q S  C
Sbjct:  143 LNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.951e-69
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD 534
            MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141          

HSP 2 Score: 45.8246 bits (107), Expect = 1.951e-69
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 2
Query:  548 PFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP----TVQIRGQPV-NQKSGCC 715
            PF+ETSA  +TNVE AF+ MA  IK  M+ Q  +   +       V ++GQ + N   GCC
Sbjct:  146 PFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.151e-66
Identity = 121/147 (82.31%), Postives = 136/147 (92.52%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M+NEYDYLFKLLLIGDS VGKSCLLLRFADD+Y++SYISTIGVDFKIRT+EQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYD T+ ESFNNVKQWL+EIDRYA+E+V KLL+GNK D+  +KVVS ET +A ADE+GI F
Sbjct:    1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPF 147          

HSP 2 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  494 TKLCPMRQPRHLRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 715
            +K+      R L  +LG PF+ETSAK + NVEQAF+ +A  IK +M SQ  A+  + P TVQ++GQP+ Q +G C
Sbjct:  128 SKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.704e-63
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+  DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL   K+V   TA+ +AD +GI F
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPF 147          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 4.618e-59
Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = 1
Query:  100 HDTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 546
            H +  + EYD L K+L+IGDSGVGKSC+LLRFAD+ + +SYISTIGVDF IRT+E DGK IKLQIWDTAGQERF+TIT+SYYRGAHG+I+VYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL + + V ++ AK FADE+ I
Sbjct:   22 HGSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNI 170          

HSP 2 Score: 34.2686 bits (77), Expect = 4.618e-59
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASIK 622
            +L  P METSAK +T +++AF+ +A+ IK
Sbjct:  167 ELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.673e-59
Identity = 111/148 (75.00%), Postives = 126/148 (85.14%), Query Frame = 1
Query:  109 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +M  E+D+ FK+LLIGDSGVGKSCLLLRFADDS+ +++ISTIGVDFKI+T+  DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL   KVV    AK+FA+  GI F
Sbjct:    2 SMAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPF 149          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR5.204e-7984.35GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPTM1_MAIZE4.761e-7779.59GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1A_DICDI1.378e-7681.63Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1C_HUMAN8.848e-7682.99Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_SCHPO5.679e-7582.31GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_YEAST1.951e-6980.85GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RABD1_ARATH2.151e-6682.31Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1B_DICDI1.704e-6379.59Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1C_DICDI4.618e-5965.77Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB1D_DICDI5.673e-5975.00Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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