FC925453 | Citrus Genome Database

Overview


Name	FC925453
Unique Name	FC925453
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	762

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.808e-55
Identity = 90/147 (61.22%), Postives = 119/147 (80.95%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRTVE DGK IKLQIWDTAGQERFRTIT++YYRGA GI+ VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKF 147

HSP 2 Score: 39.2762 bits (90), Expect = 3.808e-55
Identity = 18/55 (32.73%), Postives = 32/55 (58.18%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 691
            L +  G  F+ETSAKS+ NVE+AF+ +A  I  ++  +   N+ +    +++  P
Sbjct:  139 LAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSPP 193

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.809e-55
Identity = 89/147 (60.54%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKF 147

HSP 2 Score: 38.891 bits (89), Expect = 3.809e-55
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 658
            L +  G  F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:  139 LAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.809e-55
Identity = 89/147 (60.54%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKF 147

HSP 2 Score: 38.891 bits (89), Expect = 3.809e-55
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 658
            L +  G  F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:  139 LAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.809e-55
Identity = 89/147 (60.54%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKF 147

HSP 2 Score: 38.891 bits (89), Expect = 3.809e-55
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 658
            L +  G  F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:  139 LAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.966e-55
Identity = 88/147 (59.86%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKF 147

HSP 2 Score: 40.4318 bits (93), Expect = 4.966e-55
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK 703
            L +  G  FMETSAK+  NVE AF  +A  IK +M  +   N+ +     ++  P  QK
Sbjct:  139 LALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.966e-55
Identity = 88/147 (59.86%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKF 147

HSP 2 Score: 40.4318 bits (93), Expect = 4.966e-55
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK 703
            L +  G  FMETSAK+  NVE AF  +A  IK +M  +   N+ +     ++  P  QK
Sbjct:  139 LALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.966e-55
Identity = 88/147 (59.86%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKF 147

HSP 2 Score: 40.4318 bits (93), Expect = 4.966e-55
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK 703
            L +  G  FMETSAK+  NVE AF  +A  IK +M  +   N+ +     ++  P  QK
Sbjct:  139 LALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.474e-55
Identity = 88/147 (59.86%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKF 147

HSP 2 Score: 40.0466 bits (92), Expect = 6.474e-55
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK 703
            L +  G  FMETSAK+  NVE AF  +A  IK +M  +   N+ +     ++  P  QK
Sbjct:  139 LALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQK 197

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.434e-54
Identity = 89/147 (60.54%), Postives = 120/147 (81.63%), Query Frame = 1

Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKF 147

HSP 2 Score: 36.965 bits (84), Expect = 1.434e-54
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 2

Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 658
            L +  G  F+ETSAKS+ NVE+AF  +A  I  ++  +   +N+
Sbjct:  139 LAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182

[Close]

BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 96/143 (67.13%), Postives = 124/143 (86.71%), Query Frame = 1

Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++ASENV K+L+GNKCD    + VS+E  +A ADE+G+ F
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKF 148

The following BLAST results are available for this feature:

BLAST of FC925453 vs. ExPASy Swiss-Prot

BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB8_DISOM	3.808e-55	61.22	Ras-related protein Rab-8 OS=Discopyge ommata PE=2...	[more]
RAB8B_RAT	3.809e-55	60.54	Ras-related protein Rab-8B OS=Rattus norvegicus GN...	[more]
RAB8B_PONAB	3.809e-55	60.54	Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8...	[more]
RAB8B_MOUSE	3.809e-55	60.54	Ras-related protein Rab-8B OS=Mus musculus GN=Rab8...	[more]
RAB8A_MACFA	4.966e-55	59.86	Ras-related protein Rab-8A OS=Macaca fascicularis ...	[more]
RAB8A_HUMAN	4.966e-55	59.86	Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8...	[more]
RAB8A_CANFA	4.966e-55	59.86	Ras-related protein Rab-8A OS=Canis familiaris GN=...	[more]
RAB8A_BOVIN	6.474e-55	59.86	Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ...	[more]
RAB8B_HUMAN	1.434e-54	60.54	Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8...	[more]
YPT2_SCHPO	2.467e-54	67.13	GTP-binding protein ypt2 OS=Schizosaccharomyces po...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA