FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  112 MNNEYDYL--FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 501
            ++N+ D +  FKL+L+GD GVGK+  + R     + + YI+T GV+     +      I+  IWDTAGQE+   +   YY GA   I+++DVT + ++ N+ +W  ++ R   ENV  +LVGNK D   +KV
Sbjct:    2 VDNKQDVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRIC-ENVPIVLVGNKVDSKDSKV 132          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  118 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 501
            NE    FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV
Sbjct:    4 NEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV 130          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL   + V     +A A E G  F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPF 142          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL   + V     +A A E G  F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPF 142          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL   + V     +A A E G  F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPF 142          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  118 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 501
            NE    FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV
Sbjct:    4 NEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV 130          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 501
            NN     FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV
Sbjct:    7 NNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKV 134          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.914e-18
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFA 531
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++   VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL   +VV  E  +  A
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIEDSYR-EQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLA 135          

HSP 2 Score: 23.8682 bits (50), Expect = 9.914e-18
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIKNR 628
            F+E+SAKS  NV + F  +   I  +
Sbjct:  143 FLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 501
            FKL+L+GD GVGK+  + R     + + YI+T GV+     +      I+  IWDTAGQE+   +   YY GA+  I+++DVT + ++ N+ +W  ++ R   EN+  +LVGNK D    KV
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRIC-ENIPIVLVGNKVDSKDRKV 132          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  139 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---------LLVGNKCD 483
            KL+LIGD  VGK+ +L R     + E Y STIG DF  +T  Q+     +Q+WDTAGQE++  +TS+++R +  +I+V+D++++ SF N+  W  +   + S+++N          LL+ NK D
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQ---FKSKSINPDGTEKQLPILLLANKSD 131          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_TETPY4.859e-1837.12GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_DANRE6.346e-1835.94GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAP2C_MOUSE8.288e-1836.43Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN8.288e-1836.43Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN8.288e-1836.43Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RAN_CARAU8.288e-1835.94GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
GSP2_YEAST8.288e-1837.21GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
RP1BL_HUMAN9.914e-1836.09Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RAN_TETTH1.082e-1737.70GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RB32D_DICDI1.414e-1737.10Ras-related protein Rab-32D OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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