FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 50/140 (35.71%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDLT   V + E A+  A + GI +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKN-EQAREVAKQYGIPY 141          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 50/140 (35.71%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDLT   V + E A+  A + GI +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKN-EQAREVAKQYGIPY 141          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.752e-16
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 546
            +K++++G SG GK+ L +RF +  ++E+Y  TI   ++       G+ I L+I DT+G ER+  +   Y R A   ++VY +T + S     N+K ++ ++       +  +++GNKCDL   +VV  E  +A   + GI
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGI 143          

HSP 2 Score: 25.409 bits (54), Expect = 1.752e-16
Identity = 10/37 (27.03%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 661
            F+ETSAK   N++ A+  +   + ++ +    S+N +
Sbjct:  146 FLETSAKIDMNIQSAYDCLTLQLMSKQSFLNGSSNGK 182          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.766e-16
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  139 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISFH 555
            KL+++G  GVGKS L ++F    ++  Y  TI  D   +    DG   +L I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    ++   +LVGNK DL + + V    A AF    G S H
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF----GASHH 165          

HSP 2 Score: 21.9422 bits (45), Expect = 1.766e-16
Identity = 8/24 (33.33%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  551 FMETSAKSATNVEQAFMAMAASIK 622
            + E SAK   NV++AF  +  +++
Sbjct:  168 YFEASAKLRLNVDEAFEQLVRAVR 191          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.775e-16
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAK 522
            +KL+++G  GVGKS + ++F    ++  Y  TI  D   +    D    KL I DTAGQE F  +   Y R   G ++V+ + D  SF+ + ++  +I R    +    L+VGNKCDL   + VS E A+
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIE-DSYTKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQ 134          

HSP 2 Score: 26.9498 bits (58), Expect = 1.775e-16
Identity = 14/46 (30.43%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  509 MRQPRHLRMKLGFPFMETSAKSATNVEQAFMAMAASI-KNRMASQP 643
            + + ++    L  P++E SAK   NV+QAF  +   + K ++A +P
Sbjct:  130 LEEAQNTSRNLMIPYIECSAKLRVNVDQAFHELVRIVRKFQIAERP 175          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  139 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 498
            K++L+GDS VGK+ ++ R     +L  + +TIG  F  +T+E         K I ++IWDTAGQER++++   YYR A+  ++V+++ D  S    K W  ++   A +    ++VGNK DL   +
Sbjct:    6 KVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRA-QGTQVIIVGNKYDLVCEE 130          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GI F
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPF 141          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  ++ V  + A+  A   GI F
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPF 141          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  ++ V  + A+  A   GI F
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPF 141          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  136 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  ++ V  + A+  A   GI F
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPF 141          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROPS1.563e-1635.71Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.563e-1635.71Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAPC_DICDI1.752e-1630.71Ras-related protein rapC OS=Dictyostelium discoide... [more]
RRAS_HUMAN1.766e-1636.43Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RAS2_DROME1.775e-1634.62Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
YPT10_YEAST2.041e-1634.13GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RASK_ORYLA2.041e-1635.00GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RASK_MONDO2.041e-1635.00GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RASK_MELGA2.041e-1635.00GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASK_HUMAN2.041e-1635.00GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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