FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.390e-47
Identity = 75/147 (51.02%), Postives = 110/147 (74.83%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +++EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+SF
Sbjct:    5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSF 151          

HSP 2 Score: 47.7506 bits (112), Expect = 7.390e-47
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 2
Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 721
            L  K G  F+ETSA  ATN+E+AF  +   I     K  +A+Q A+  A  P    T+ +     N K GCCST
Sbjct:  143 LSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 87/143 (60.84%), Postives = 113/143 (79.02%), Query Frame = 1
Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+D KI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRF 148          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.639e-46
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = 1
Query:  133 LFKLLLIGDSGVGKSCLLLRFAD-DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +FK+LLIGDS VGK+ LLLRF D +++ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG++V YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL   K+V+   A+ +AD +GI F
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPF 146          

HSP 2 Score: 40.817 bits (94), Expect = 1.639e-46
Identity = 23/59 (38.98%), Postives = 29/59 (49.15%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 715
            LG PF+ETSA +  NVE+AFMAMA  I          +  +P    + G P   K   C
Sbjct:  142 LGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPSVVKP----VCGSPPRTKKNIC 196          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 85/148 (57.43%), Postives = 111/148 (75.00%), Query Frame = 1
Query:  109 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            T +  YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD   N+ VS E  +  A ++ + F
Sbjct:    6 TSSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPF 153          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.621e-46
Identity = 77/146 (52.74%), Postives = 109/146 (74.66%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VVS E  +  A ++G  F
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEF 161          

HSP 2 Score: 33.113 bits (74), Expect = 3.621e-46
Identity = 23/64 (35.94%), Postives = 29/64 (45.31%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 712
            LGF F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:  157 LGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.217e-46
Identity = 85/143 (59.44%), Postives = 115/143 (80.42%), Query Frame = 1
Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+   +VV+YE  +A A E+G+ F
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD-TRVVTYEQGEALAKELGLPF 158          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.718e-46
Identity = 69/158 (43.67%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   82 DSFDPTHDTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            D   P      +  YD   K++L+GDSGVGK+C L++F D ++L  ++I+T+G+D + + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+ F
Sbjct:   12 DGEAPERSPPFSPNYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPF 169          

HSP 2 Score: 51.6026 bits (122), Expect = 4.718e-46
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 718
            L  + G PFMETSAK+  NVE AF+A+A  +K R   QP       P+ QIR    +QK  S CCS
Sbjct:  161 LAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPDE-----PSFQIRDYVESQKKRSSCCS 221          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.731e-46
Identity = 84/147 (57.14%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ E++I TIG++FKI+TV  +GK IKLQIWDTAG++RFR + +S+YRG HG+I+VYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL + KVV    A+ FAD + I F
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPF 145          

HSP 2 Score: 30.8018 bits (68), Expect = 4.731e-46
Identity = 14/42 (33.33%), Postives = 21/42 (50.00%), Query Frame = 2
Query:  539 LGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 664
            L  PF E SAK + N+E+AF+++     NR+          P
Sbjct:  141 LDIPFKEISAKQSINIEEAFISLVKLCINRIEETSLKKTQSP 182          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.774e-45
Identity = 68/158 (43.04%), Postives = 109/158 (68.99%), Query Frame = 1
Query:   82 DSFDPTHDTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            D   P      +  YD   K++L+GD+GVGK+C L++F D ++L  ++I+T+G+DF+ + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+ F
Sbjct:   12 DGEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPF 169          

HSP 2 Score: 49.6766 bits (117), Expect = 1.774e-45
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2
Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 718
            L  + G PF+ETSAK+  NVE AF+A+A  +K R     A + A  P+ QIR    +QK  S CCS
Sbjct:  161 LAREYGVPFLETSAKTGMNVELAFLAIAKELKYR-----AGHQADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.734e-45
Identity = 76/146 (52.05%), Postives = 116/146 (79.45%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+   +V+S+E  +  AD++G+ F
Sbjct:   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEF 160          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA7.390e-4751.02Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB10_CHICK1.110e-4660.84Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RABG1_DICDI1.639e-4656.74Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
SEC4_CANAL1.893e-4657.43Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB3D_RAT3.621e-4652.74GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
SEC4_CANGA4.217e-4659.44Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB37_MOUSE4.718e-4643.67Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RABF1_DICDI4.731e-4657.14Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB37_HUMAN1.774e-4543.04Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB3_DROME2.734e-4552.05Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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