FC925453

Overview
NameFC925453
Unique NameFC925453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.570e-45
Identity = 84/143 (58.74%), Postives = 114/143 (79.72%), Query Frame = 1
Query:  124 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+   +VV+ +  +A A E+GI F
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPF 158          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.357e-44
Identity = 76/146 (52.05%), Postives = 114/146 (78.08%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FKLL+IG+S VGK+  L R+ DDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+ + +VVS +  +  AD++G+ F
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.268e-44
Identity = 74/147 (50.34%), Postives = 107/147 (72.79%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +++EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++ YD+T +++F+NV++WL E+  +   N+  +L GNK DL   + VS +  +A   + G+SF
Sbjct:    5 VDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSF 151          

HSP 2 Score: 43.5134 bits (101), Expect = 3.268e-44
Identity = 26/71 (36.62%), Postives = 36/71 (50.70%), Query Frame = 2
Query:  536 KLGFPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 721
            K G  F+ETSA  A NV++AF  +   I     K  +A+Q A+ +   P    T+ +     N K GCCST
Sbjct:  146 KEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 4.259e-44
Identity = 76/147 (51.70%), Postives = 108/147 (73.47%), Query Frame = 1
Query:  112 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            ++ EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT + +GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNK DL   + V+ E  ++ A++ G+SF
Sbjct:    5 VDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSF 151          

HSP 2 Score: 39.6614 bits (91), Expect = 4.259e-44
Identity = 28/75 (37.33%), Postives = 38/75 (50.67%), Query Frame = 2
Query:  527 LRMKLGFPFMETSAKSATNVEQAFMAMAASI-----KNRMASQ--PASNNARP---PTVQIRGQPVNQKSGCCST 721
            L  K G  F+ETSA  ATNVE+AF  +   I     K  +A+Q   A+N+A P    T+ +       K  CCS+
Sbjct:  143 LAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
BLAST of FC925453 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 77/146 (52.74%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  115 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGISF 552
            +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+   +VVS E  +  AD +G  F
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF 161          
The following BLAST results are available for this feature:
BLAST of FC925453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_YEAST3.570e-4558.74Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB3_CAEEL1.357e-4452.05Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RB11A_TOBAC3.268e-4450.34Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH4.259e-4451.70Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RAB3A_RAT5.155e-4452.74Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG5.155e-4452.74Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE5.155e-4452.74Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA5.155e-4452.74Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN5.155e-4452.74Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN5.155e-4452.74Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ21FM1 TF Citrus clementina cDNA clone KN0AAP8YJ21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925453 ID=FC925453; Name=FC925453; organism=Citrus clementina; type=EST; length=762bp
CTACGGCGAATTAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAAATTA
AAATTTCTCATCATCTCGTCGAAGCTTCTGTGATTCATTCGATCCAACGC
ACGACACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTGCTC
ATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGCTGA
TGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTAAAA
TCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGGGAC
ACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCGTGG
GGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAAAGCTTCA
ACAATGTAAAGCAATGGTTGAATGAAATTGACCGATATGCAAGTGAAAAT
GTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAAAGT
TGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTTCCT
TTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTCAT
GGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCGTCGA
ACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCTGTCAACCAG
AAATCTGGTTGCTGCTCCACTTAGAAGGGAATTAGTGTTGGTGAATTTCT
GATGTTTATCAA
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