FC929848

Overview
NameFC929848
Unique NameFC929848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:104..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.027e-22
Identity = 61/218 (27.98%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDS---ELEKL-DHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXX-----DDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +P +++ PE + P    D +    +P+ID+  +LSGD +   E+ +L   AC+  GFFQ++NHG+ + L+      +  FF +P+ EK++  + PG+  G+   F      KL W    +  + P+                     +    Y +E+  L+L+I++++ ++L +     +  FE     +R+NYYPPC +P + LG  PH D + LTI
Sbjct:   17 IPSQFIWPEGESPT--PDAAEELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTI 232          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 66/236 (27.97%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   11 LVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK---LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTM-------FTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +  PS+L L  N+P   + P   +P I+  ++  D      +P+ID+  LLS   S L+    +  ACK+ GFF ++NHG+S  L+         FF++P+ EK++  ++ G+  G+   F      KL W    +         +                      + Y   + +L+LKI++L+  +L +  +  +E FE     +R+NYYPPC +P+  LG  PH D + LTI
Sbjct:   28 IFNPSMLNLQANIPNQFIWPDDEKPSIN--VLELD------VPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTI 255          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 57/216 (26.39%), Postives = 107/216 (49.54%), Query Frame = 2
Query:   53 LTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPG--DIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF--ENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            + T+P  Y+R E + P +        Q+PVID+ +  + +++ +E +  A +EWG FQ++NHG+    + K++   +EFF LP  EK+   +  G   +EG+G         K  W         P                 +  E Y   L+ +  K+ + ++  + ++ +++K+    ++ +  L++NYYPPCP+P+  LG+  H+D S +TI
Sbjct:   16 MDTIPSEYIRSESEQPAVTTMQGVVLQVPVIDLGSSNNTEENLVELIAEASREWGIFQVVNHGIPDDAIAKLQKVGKEFFELPQQEKEVIAKPEGYQGVEGYGTKLQKELGGKKGWVDHLFHIIWPKSAVNYNFWPNNPPLYREANEEYAVALRGVVDKLFEALSLGIGLEKHELKKASGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITI 231          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 67/239 (28.03%), Postives = 108/239 (45.19%), Query Frame = 2
Query:    2 GNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK----LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDW----GYGF-TMFTLPTXXXXXXXXXXXXXXXXDDL-EVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            G+ +  P+   + +      +P  +V P  D    R   ++   +PV+D+  L  GD   L +    +  AC   GFFQ+  HGV ++L         +FF LP+ EK++  + PG + G+          KL W     +GF      P                   + + Y  E+K L+L I++L+  +L ++    +E F +    +R NYYPPCP+PE+ LG  PH D + LTI
Sbjct:   22 GSGIAAPAAAAVCDLRMEPKIPEPFVWPNGD---ARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTI 257          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 67/239 (28.03%), Postives = 108/239 (45.19%), Query Frame = 2
Query:    2 GNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK----LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDW----GYGF-TMFTLPTXXXXXXXXXXXXXXXXDDL-EVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            G+ +  P+   + +      +P  +V P  D    R   ++   +PV+D+  L  GD   L +    +  AC   GFFQ+  HGV ++L         +FF LP+ EK++  + PG + G+          KL W     +GF      P                   + + Y  E+K L+L I++L+  +L ++    +E F +    +R NYYPPCP+PE+ LG  PH D + LTI
Sbjct:   22 GSGIAAPAAAAVCDLRMEPKIPEPFVWPNGD---ARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTI 257          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 60/218 (27.52%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDS---ELEKL-DHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXX-----DDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +P +++ PE + P    D +    +P+I++  +LSGD +   E+ +L   AC+  GFFQ++NHG+ + L+      +  FF +P+ EK++  ++PG+  G+   F      KL W    +  + P+                     +    Y +E+  L+L+I++++ ++L +     +  FE     +R+NYYPPC +P + LG  PH D + LTI
Sbjct:   17 IPSQFIWPEGESPT--PDAAEELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTI 232          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 69/236 (29.24%), Postives = 109/236 (46.19%), Query Frame = 2
Query:   11 LVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK---LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEV-------YLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +  PS+L L + +P   + P   +P ID P +         +P ID    LS  DS LE    +  AC + GFF ++NHGVS SL+      ++ FF++P+  K+K  ++PG+  G+   F      KL W    +                       + E        Y   + +L+LKI++L+  +L ++ +  +  FE     +R+N+YPPC  P+  LG  PH D S LTI
Sbjct:   30 IFNPSLLNLQSQIPNQFIWPDEEKPSIDIPELN--------VPFID----LSSQDSTLEAPRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTI 253          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 61/213 (28.64%), Postives = 108/213 (50.70%), Query Frame = 2
Query:   59 TVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTL--LSGDDSEL-EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            T+  ++VR E + P +  +D S  ++P+I +  +  + G   E+ +K+  AC++WG FQ+++HGV + L+ ++    +EFF LP +EK +F    G   GF        E   DW    T F+ P                 +  + Y  EL  L  K+L ++++A+ +D   + +   +  Q + +N+YP CPQP+  LGL  H+D   +T+
Sbjct:   15 TLQQKFVRDEDERPKVAYNDFS-NEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITL 226          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 62/214 (28.97%), Postives = 104/214 (48.60%), Query Frame = 2
Query:   59 TVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHT----LLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            T+   +VR E + P +  +D S  ++PVI +      L +  D    K+  AC++WG FQ++NHGV S+L+ ++    +EFF LP +E  +F    G   GF        E   DW    T F+ P                    + Y  +L  L  K+L+++++A+ +D + +     +  Q + +N+YP CPQP+  LGL  H+D   +T+
Sbjct:   14 TLQSSFVRDEDERPKVAYNDFS-NEIPVISLTKESMKLAAVVDEICRKIVEACEDWGIFQVVNHGVDSNLISEMTRLAREFFALPPEENVRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPLRTRDYSRWPDKPEGWRSVTQEYSEKLMGLACKLLEVLSEAMDLDKDALTNACVDMDQKVVVNFYPQCPQPDLTLGLKRHTDPGTITL 226          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 64/225 (28.44%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   23 SILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTL--LSGDDSEL-EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            ++ ELA    L +   ++VR E + P +  ++ S  ++PVI +  +  + G   E+  ++  AC+ WG FQ+++HGV +SLV  +    ++FF LP +EK +F    G   GF        E   DW    T F+ P                    E Y  +L  L  K+L+++++A+ ++   +     +  Q + +NYYP CPQP+  LGL  H+D   +T+
Sbjct:    4 TLTELAGESKLNS---KFVRDEDERPKVAYNEFS-DEIPVISLAGIDDVDGKRGEICREIVEACENWGIFQVVDHGVDTSLVADMTRLARDFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTEEYSEKLMGLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITL 224          
The following BLAST results are available for this feature:
BLAST of FC929848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
GAO1D_WHEAT6.027e-2227.98Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX1_ARATH1.028e-2127.97Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
FLS_PETCR1.028e-2126.39Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
GAOX2_ORYSJ2.290e-2128.03Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.290e-2128.03Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
GAO1A_WHEAT2.290e-2127.52Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAOX2_ARATH2.991e-2129.24Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
FL3H_MALDO2.991e-2128.64Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FL3H_VITVI6.664e-2128.97Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]
FL3H_MATIN3.307e-2028.44Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001A12EF PostHarvC1 Citrus clementina cDNA clone C34001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929848 ID=FC929848; Name=FC929848; organism=Citrus clementina; type=EST; length=690bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGAAAGAGCTGTTTGAAAACGGGATGCAATC
ATTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GNCTTTAGCCTCATTCTGATGGCTCCGTACTCACCATCCT
back to top