FC929848

Overview
NameFC929848
Unique NameFC929848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.467e-60
Identity = 113/232 (48.71%), Postives = 159/232 (68.53%), Query Frame = 2
Query:    5 NSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGD--DSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFE--NGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +S++ PS+ E+     +TTVPPRYVR + D   + +D     ++P+IDM  L S    DSE+EKLD ACKEWGFFQL+NHG+ SS ++KVK+EIQ+FFNLP++EKKKFWQ+P +IEGFGQ F+ SE+QKLDW   F     P                 D LE+Y +E++++   ++  MA+AL + P ++++LF+  + +QS+RMNYYPPCPQP+QV+GL PHSD   LT+
Sbjct:   10 SSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTV 241          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 84/235 (35.74%), Postives = 124/235 (52.77%), Query Frame = 2
Query:    2 GNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDS--ELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMD----PNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            G SL   ++  LA    L  +P RYVRPE++H  +   D+S + +PVID+  LL    +  EL K   AC +WGFFQL+NHGV   ++EK+K + ++FF LP  EK  + Q P  +EG+GQ F+TSEEQKLDW     + T P                 + +E Y  EL+ + + +  +MAK L ++       ++ +F    + L     P      + LGL PHSD + LT+
Sbjct:    9 GGSLPVENVQVLAGK-ELKNLPNRYVRPELEHDDVVPIDNSLE-IPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELL-----PSMSSCGEGLGLSPHSDATGLTL 236          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 75/237 (31.65%), Postives = 117/237 (49.37%), Query Frame = 2
Query:   20 PSILELANNLPLTTVPPRYVRPE------IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK----LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            P + ELA +  L T+P  YVRPE      I + L     S   QLP ID+  + S D+   +K    L  A  +WG   L+NHG+   L+++VKA  +EFF LP++EK+ +   Q  G+++G+G     +   +L+W   F     P                      Y  +L+ L  KIL +++  L ++   + KE+   E+ +  +++N+YP CPQPE  LG   H+D S LT
Sbjct:   10 PRVEELARS-GLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALT 245          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 67/225 (29.78%), Postives = 113/225 (50.22%), Query Frame = 2
Query:   53 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSEL----EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            ++T+P  Y+RP+     I     +  ++   Q+P ID+  + S ++       EKL  A  +WG   L+NHG+S  L++KV+   + FF+LPI++K+K+   Q  G I+G+G     +   +L+W   F     P                 +    Y  +L+ L  K+L +++  L +D   + KE+   E  +  +++NYYP CPQPE  LG+  H+D S LT
Sbjct:   19 ISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 243          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/225 (28.89%), Postives = 111/225 (49.33%), Query Frame = 2
Query:   53 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSE----LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            + ++P  Y+RP+     I+   +        Q+P ID+  + S D+      +E+L  A  +WG   L+NHG+ + L+E+VK   +EFF+L ++EK+K+   Q  G I+G+G     +   +L+W   F     P                 +    Y   L+ L  K+   ++  L ++P+ + KE+   E  +  +++NYYP CPQPE  LG+  H+D S LT
Sbjct:   15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 74/243 (30.45%), Postives = 117/243 (48.15%), Query Frame = 2
Query:   14 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDD---SEL-----EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSL----RMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            V P +  L+++  + ++P  Y+RP+ +   I N           Q+P ID+  + S D+    E+     E+L  A  EWG   L+NHG+S  L+ +VK   + FFNLP++EK+K+   Q  G I G+G     +   +L+W   F     P                      Y  +L++L  KIL +++  L ++   + E    GM+ L    ++NYYP CPQPE  LG+  H+D S LT
Sbjct:    5 VAPRVESLSSS-GIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRL-EKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALT 245          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 71/235 (30.21%), Postives = 112/235 (47.66%), Query Frame = 2
Query:   20 PSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDSELEK---LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            PS +E      +  +P  YVRP+ +   I N           Q+P ID+  + S D    EK   L  A  EWG   L+NHG+S  L+ +VK   + FF+ P++EK+K+   Q  G+++G+G     S   +L+W   F     P                      Y  +++ L  KIL +++  L ++   + KE+   E+ +  +++NYYP CPQPE  LG+  H+D S LT
Sbjct:    9 PSRVESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALT 243          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 61/211 (28.91%), Postives = 107/211 (50.71%), Query Frame = 2
Query:   74 YVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSE------LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +VR E + P +  +  S  ++P+I +  L   DDS+        K+  AC++WG FQ+++HG+ S L+ ++    +EFF LP +EK ++    G   GF    +   +  +DW    T F+ P                    EVY  +L  L  K+L+++++A+ ++  D+ +   +  Q + +NYYP CPQP+  LG+  H+D   +TI
Sbjct:   19 FVRDEDERPKVAYNQFS-NEIPIISLAGL--DDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTITI 226          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 61/218 (27.98%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD---SELEKL-DHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXX-----DDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +P +++ PE + P    D +    +P+ID+  +LSGD    +E+ +L   AC+  GFFQ++NHG+ + L+      +  FF +P+ EK++  ++PG+  G+   F      KL W    +  + P+                     +    Y +E+  L+L+I++++ ++L +     +  FE     +R+NYYPPC +P + LG  PH D + LTI
Sbjct:   17 IPSQFIWPEGESPT--PDAAEELHVPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTI 232          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.027e-22
Identity = 68/221 (30.77%), Postives = 102/221 (46.15%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD---SELEKL-DHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDD--------LEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +P ++V P+ + P   + D    Q+P+ID+   LSGD    SE  +L   A  + GFF + NHGV  SL+ +    +  FF  P  EK+K  ++ G+  G+   F+     KL W    +    P                  D         + Y   +  L+LKI++L+  +L ++    KE FE+     R+NYYP C QPE  LG  PH D + LTI
Sbjct:   37 IPQQFVWPDHEKP---STDVQPLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTI 254          
The following BLAST results are available for this feature:
BLAST of FC929848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SRG1_ARATH1.467e-6048.71Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.431e-3135.74S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_PERFR1.298e-2431.65Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MALDO1.435e-2329.78Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_ARATH5.451e-2328.89Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_VITVI7.120e-2330.45Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PETHY1.586e-2230.21Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
FNSI_PETCR2.705e-2228.91Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
GAO1B_WHEAT4.615e-2227.98Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAOX3_ARATH6.027e-2230.77Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC34001A12EF PostHarvC1 Citrus clementina cDNA clone C34001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929848 ID=FC929848; Name=FC929848; organism=Citrus clementina; type=EST; length=690bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGAAAGAGCTGTTTGAAAACGGGATGCAATC
ATTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GNCTTTAGCCTCATTCTGATGGCTCCGTACTCACCATCCT
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