FC929848

Overview
NameFC929848
Unique NameFC929848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:104..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 62/225 (27.56%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   23 SILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTL--LSGDDSEL-EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            ++ ELA    L +   ++VR E + P +  +  S  ++PVI +  +  + G   E+  ++  AC+ WG FQ+++HGV ++LV  +    ++FF LP ++K +F    G   GF        E   DW    T F+ P                    E Y   L +L  K+L+++++A+ ++   +     +  Q + +NYYP CPQP+  LGL  H+D   +T+
Sbjct:    5 TLTELAGESKLNS---KFVRDEDERPKVAYNVFS-DEIPVISLAGIDDVDGKRGEICRQIVEACENWGIFQVVDHGVDTNLVADMTRLARDFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPEGWVKVTEEYSERLMSLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITL 225          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 57/207 (27.54%), Postives = 102/207 (49.28%), Query Frame = 2
Query:   71 RYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSEL-EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            ++VR E + P +  +  S  ++PVI +  +     +E+ +++  AC++WG FQ+++HGV + L+  +    ++FF+LP  EK +F    G   GF        E   DW    T F+ P                    E Y   L  L  K+L+++++A+ ++   + +   +  Q + +NYYP CPQP+  LGL  H+D   +T+
Sbjct:   18 KFVRDEDERPKVPYNTFS-NEIPVISLAGIDGCRRAEICDEIVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRFDMTGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITL 223          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 60/228 (26.32%), Postives = 105/228 (46.05%), Query Frame = 2
Query:   20 PSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMK-----ELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            P  + L+N     ++P  Y     D  L+ +  +S + LP+ID+      D      + HAC  WG FQ+ NHGV S L++ ++      F LP+  K K  +    + G+G   I S   K  W  GFT+   P                 + +E Y   ++ L  K++     +L ++  D++       F+     +++N+YP CP+P++ +GL  H+D +++TI
Sbjct:   13 PIHIPLSNPPDFKSLPDSYTWTPKDD-LLFSASASDETLPLIDL-----SDIHVATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSP-LHDFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTI 233          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 58/221 (26.24%), Postives = 104/221 (47.06%), Query Frame = 2
Query:   38 ANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQS--LRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +++L    +P  ++R E + P I         +PV+D+      ++S    +  A +EWG FQ++NHG+ + L+ +++   ++FF LP  EK+     +   DIEG+G       E K  W         P                 +  E Y   +K L+  +L +++  L +  + +KE     M    +++NYYPPCP+P+  LG+  H+D S +T+
Sbjct:   11 SSSLLTEAIPLEFIRSEKEQPAITTFRGPTPAIPVVDLSD--PDEESVRRAVVKASEEWGLFQVVNHGIPTELIRRLQDVGRKFFELPSSEKESVAKPEDSKDIEGYGTKLQKDPEGKKAWVDHLFHRIWPPSCVNYRFWPKNPPEYREVNEEYAVHVKKLSETLLGILSDGLGLKRDALKEGLGGEMAEYMMKINYYPPCPRPDLALGVPAHTDLSGITL 229          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 54/199 (27.14%), Postives = 96/199 (48.24%), Query Frame = 2
Query:  116 DSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQS--------LRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            ++++  +PVI +      +  E   L  AC+EWG F + +HGVS SL+  V  +++  F+LP+  K    + P +  G+G + I+    KL W  GF++                     + +E Y   + +L+ +++ ++  +L +   D+  L  +   S        L++N YP CP P   +GL PH+D S+LTI
Sbjct:   41 ETTSGPIPVISL-----SNPEEHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTI 234          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  119 SSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPND-----MKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            ++ + +P+ID+            ++ HAC+ WG FQ+ NHGV   L++ ++      F LP+  K K  +    + G+G   I S   K  W  GFT+   P                 D +E Y   +K L  K++ L   +L +   D     +         +L++N+YP CP+P++ +GL  H+D ++LTI
Sbjct:   52 ATGENIPLIDLD-----HPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSP-LNDFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTI 240          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 62/218 (28.44%), Postives = 99/218 (45.41%), Query Frame = 2
Query:   53 LTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSE-----LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQ-PGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +T +P  +  P       +   SS   +P ID+     G DS      +EK+  A ++WGFFQ++NHG+   ++EK+   I+EF     + KK F+ + P     +   F        +W      +T P                 +    Y  E+  L   + +L+++AL ++ N +K++       L  +YYPPCPQP+  LGL  HSD S LTI
Sbjct:   35 ITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDLKG--GGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIE----YSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTI 246          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 54/202 (26.73%), Postives = 98/202 (48.51%), Query Frame = 2
Query:  116 DSSAQQLPVIDMH----TLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM-------KELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            D+  + +PVID+     T L GD         A K WG FQ+ NHG+S  L++ +++  +  F++P + K +       + G+G+  I+   +K  W  GFT+                       ++ Y+ E++ L  ++L  +  +L +   D+       K   + G  ++R+N+YP CP+PE+ +GL  H+D ++LTI
Sbjct:   43 DAVEESIPVIDLSNPDVTTLIGD---------ASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTI 235          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 61/220 (27.73%), Postives = 100/220 (45.45%), Query Frame = 2
Query:   62 VPPRYVRPEI-DHPLIRNDDSSAQQ--LPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTL---PTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM------KELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            VP  +  P + DHP++    +  +   +PV+DM      D    E +  A ++WG F L+ HGV   L+ +V+A I   F LP  EK +  ++PGD  G+G   I+S   K  W  G+T                           +E +  E++ L  K+L+L   AL +    +      +++ E    ++ +N+YP CP P++ LGL  H+D    T
Sbjct:   22 VPETHAWPGLHDHPVVDGSGAGGEPDAVPVVDMR-----DPFAAEAVGLAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFT 236          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 52/183 (28.42%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSD 670
            PV+DM  L++G++  + LEK++ AC+ WGFF+L+NHG+S+ L++ V+   ++ +   ++++ K       +E      + SE   LDW   F +  LP+                  ++ +  EL+ L  K+LDL+ + L ++   +K+ F          +++ YPPCP+P+ + GL  H+D
Sbjct:    5 PVVDMD-LINGEERAATLEKINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAAKGLEA-----VQSEIHYLDWESTFFLRHLPS--SNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTD 179          
The following BLAST results are available for this feature:
BLAST of FC929848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
FL3H_ARATH6.237e-1927.56Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
FL3H_CALCH1.815e-1827.54Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
G3OX2_ARATH3.095e-1826.32Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FLS1_ARATH3.095e-1826.24Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
G3OX3_ARATH3.422e-1727.14Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G3OX1_ARATH3.422e-1727.18Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCH1_ARATH4.470e-1728.441-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX4_ARATH1.301e-1626.73Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3O23_WHEAT2.897e-1627.73Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
ACCO2_MALDO2.897e-1628.421-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]

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Properties
Property NameValue
Genbank descriptionC34001A12EF PostHarvC1 Citrus clementina cDNA clone C34001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929848 ID=FC929848; Name=FC929848; organism=Citrus clementina; type=EST; length=690bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGAAAGAGCTGTTTGAAAACGGGATGCAATC
ATTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GNCTTTAGCCTCATTCTGATGGCTCCGTACTCACCATCCT
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