FC929848

Overview
NameFC929848
Unique NameFC929848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:104..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 52/183 (28.42%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSD 670
            PV+D+ +L++G++  + LEK++ AC+ WGFF+L+NHG+S+ L++ V+   ++ +   ++++ K       +   G   + SE   LDW   F +  LP+                  ++ +  EL+ L  K+LDL+ + L ++   +K++F          +++ YPPCP+P+ + GL  HSD
Sbjct:    5 PVVDL-SLVNGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEM-----VAAKGLDDVQSEIHDLDWESTFFLRHLPS--SNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSD 179          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 61/220 (27.73%), Postives = 98/220 (44.55%), Query Frame = 2
Query:   62 VPPRYVRPEI-DHPLIRNDDSSA--QQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTL---PTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM------KELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            VP  +  P + DHP++    +      +PV+DM      D    E +  A ++WG F L  HGV   L+ +V+A I   F LP  EK +  ++PGD  G+G   I+S   K  W  G+T                           +E +  E++ L  K+L+L   AL +    +      +++ E    ++ +N+YP CP P++ LGL  H+D    T
Sbjct:   22 VPETHAWPGLHDHPVVDGSGAGGGPDAVPVVDMR-----DPCAAEAVALAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFT 236          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  182 LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKL------DWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRM--NYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +E +  A  +WGFFQ++NHGVS  L+EK+K  +++F   P + +K  + +      FG+ FI      L      +W   F  +  P                 D +  Y  ++  L   + +L+++AL ++PN +K++    ++ LRM  +Y+PPCP+P+   G   HSDGS LT+
Sbjct:   84 IEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSR-----DFGRKFIYLSNFDLYTAAAANWRDTFYCYMAP----DPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDM--ECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTV 249          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  131 QLPVIDMHTLLSGDDSEL--EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFG---QLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENG-MQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            Q+PV+D    LS  D EL    +  A ++WG FQ++NHG+ + L+++++   +EFF LP  EK+   ++ G +EG+G   +L I   +  +D  Y   + T P                 +  E Y   +K L+ KI++ +++ L +    +KE+  NG    + +N+YPP P  +   GL PH+D + LT+
Sbjct:    1 QVPVVD----LSCPDEELVARTVVKASEDWGVFQVVNHGIPTELIQRLQKVGREFFELPEAEKRSCAREAGSVEGYGRRIELDIKKRKGIVDQIY---LSTWPPSSVNYRYWPKSPPDYREVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEV--NGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTL 183          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 52/187 (27.81%), Postives = 91/187 (48.66%), Query Frame = 2
Query:  134 LPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTL--PTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            LP+IDM     G D   + +  + KE+GF Q++NHG+S  ++ ++ A   EFF++P ++K +F+ +  D     +LF  S  + L   Y   +  L  P                 + +  Y +  + + ++IL L+ + L + P+        G   + +NYYPP P P + LGL PH D  ++T+
Sbjct:   35 LPIIDMSR---GRDEVRQAILDSGKEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSE--DRSERNKLFCGSAFETLGEKYWIDVLELLYPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTV 216          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 52/186 (27.96%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  128 QQLPVIDMHTLLSGDDSE--LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGL*PHSD 670
            +  PVIDM  L +G++    +EK+  AC+ WGFF+L+NHG+S  L++ V+   +E +N  ++++ K       +E      + SE   LDW   F +  LP                   ++ +  +L+ L  ++LDL+ + + ++   +K+ F   +      +++ YPPCP+PE + GL  H+D
Sbjct:    2 EAFPVIDMEKL-NGEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEA-----VQSEINDLDWESTFFLRHLPVSNISEIPDLEQDHRKA--MKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTD 179          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 63/226 (27.88%), Postives = 107/226 (47.35%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDM---HTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGD-------IEGFGQLFITSE----EQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRM---NYYPPCPQPEQVLGL*PHSDGSVLTI 688
            + P   R E D P + ND      +P+ID+   H LL      ++++  AC+++G FQ++NHG    L+ +     +EFF LP +EK+KF +  G+       +E   +L++  E    E+ L W         P                 + +  Y  E++ LT+++LD + + L +        F+N +  ++M   NYYPPCP P   LG   H DG+++T+
Sbjct:   18 IAPLQKRAEKDVP-VGND------VPIIDLQQHHHLL------VQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKF-KPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLG----YFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITL 225          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 61/220 (27.73%), Postives = 96/220 (43.64%), Query Frame = 2
Query:   62 VPPRYVRPEI-DHPLIRNDDSSA--QQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTL---PTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDM------KELFENGMQSLRMNYYPPCPQPEQVLGL*PHSDGSVLT 685
            VP  +  P + DHP++    +      +PV+DM      D    E +  A ++WG F L  HGV   L+  V+A I   F LP  EK +  ++PGD  G+G   I+S   K  W  G+T                           +E +  E++ L  K+L+L   AL +    +       ++ E    ++ +N+YP CP P++ LGL  H+D    T
Sbjct:   22 VPETHAWPGLHDHPVVDGSGAGGGPDAVPVVDMR-----DPCAAEAVALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFT 236          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 52/189 (27.51%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            PVI+M+ L +G+   S L +++ AC+ WGFF+L+NHG+S  L++KV+   +E +   ++++ K       +   G   + +E    DW   F +  LP                   ++ +  EL+ L  ++LDL+ + L ++   +K++F          +++ YPPCP+PE + GL  H+D   L +
Sbjct:    6 PVINMNNL-NGESRVSVLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEM-----VASKGLDSVETEINDTDWESTFFLRHLPVSNMSEIGDLDEEYKKV--MKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLIL 186          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 50/184 (27.17%), Postives = 98/184 (53.26%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQS----LRMNYYPPCPQPEQVLGL*PHSD 670
            PVI+M  LL+G++  + +E+LD AC+ WGFF+++NHG+S+ L+++V+   ++ +    +++   +      EG   +   ++ +KLDW   F +  LP                   ++ +  EL+ L  ++LDL+ + L ++   + + F     +     +++ YPPCP+P+ V GL  H+D
Sbjct:    8 PVINME-LLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDV---NKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRL--MKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTD 185          
The following BLAST results are available for this feature:
BLAST of FC929848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ACCO1_MALDO2.897e-1628.421-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
G3O22_WHEAT8.430e-1627.73Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
ACCH2_ARATH1.878e-1529.941-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FLS_MATIN2.453e-1530.21Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
IDS2_HORVU3.203e-1527.81Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO_ACTDE3.203e-1527.961-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
HY6H_HYONI4.184e-1527.88Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G3O21_WHEAT5.464e-1527.73Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO3_CUCME1.590e-1427.511-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_ORYSI2.712e-1427.171-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC34001A12EF PostHarvC1 Citrus clementina cDNA clone C34001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929848 ID=FC929848; Name=FC929848; organism=Citrus clementina; type=EST; length=690bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGAAAGAGCTGTTTGAAAACGGGATGCAATC
ATTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GNCTTTAGCCTCATTCTGATGGCTCCGTACTCACCATCCT
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