FC929848

Overview
NameFC929848
Unique NameFC929848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:104..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 50/184 (27.17%), Postives = 98/184 (53.26%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQS----LRMNYYPPCPQPEQVLGL*PHSD 670
            PVI+M  LL+G++  + +E+LD AC+ WGFF+++NHG+S+ L+++V+   ++ +    +++   +      EG   +   ++ +KLDW   F +  LP                   ++ +  EL+ L  ++LDL+ + L ++   + + F     +     +++ YPPCP+P+ V GL  H+D
Sbjct:    8 PVINME-LLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDV---NKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRL--MKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTD 185          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 49/186 (26.34%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  128 QQLPVIDMHTLLSGDDSEL--EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSD 670
            +  P+I++  L +G++  +  EK+  AC+ WGFF+ +NHG+S  L++KV+   +E +   ++E+ K       I+  G   + SE   +DW   F +  LP                   ++ +  +++ L+ ++LDL+ + L ++   +K++F    +     +++ YPPCP P+ V GL  H+D
Sbjct:    2 ESFPIINLEKL-NGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFK-----ESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTL--MKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTD 179          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 55/187 (29.41%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEK-KKFWQQPGD-IEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSL-----RMNYYPPCPQPEQVLGL*PHSD 670
            PVI+M  LL G    + +  L  AC+ WG ++L+NHG+S  L+ +V+   +E +    +++ K+F  +  D +E         E + LDW   F +  LPT                  ++ +  EL+NL  ++LDL+ + L ++   +K++F  G   L     +++ YPPCP+PE + GL  H+D
Sbjct:    7 PVINME-LLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLDTVENV-------EPENLDWESTFFLRHLPT--SNISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTD 183          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 56/189 (29.63%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  137 PVIDMHTLLSGDD--SELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEE----QKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSL-----RMNYYPPCPQPEQVLGL*PHSD 670
            PVI+M  LL G    + +  L  AC+ WGFF+L+NHG+S  L+ +V+A  +E +       ++F +Q    + F    + S E      LDW   F +  LPT                  ++ +  EL+ L  ++LDL+ + L ++   +K +F  G   L     +++ YPPCP+P+ + GL  H+D
Sbjct:    7 PVINME-LLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHY-------RRFREQ--RFKEFASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRA--TMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTD 183          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 48/185 (25.95%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  128 QQLPVIDMHTLLSGD-DSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSD 670
            +  P++DM  L + D  S +E +  AC+ WGFF+ +NHG+S  +++ V+   +E +   ++++ K       +E      + SE   LDW   F +  LP                   ++ +  +L+ L  ++LDL+ + L ++   +K+ F          +++ YPPCP+PE + GL  H+D
Sbjct:    2 ENFPIVDMGKLNTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFKEMVATKGLE-----CVQSEIDDLDWESTFFLRHLPVSSISEIPDLDDDYRKV--MKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTD 179          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 47/191 (24.61%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  128 QQLPVIDMHTLLS-GDDSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF--ENGMQ-SLRMNYYPPCPQPEQVLGL*PHSDGSVLTI 688
            +  P+I++  L   G  + +EK+  AC+ WGFF+L++HG+ +  ++ V+   +E +   ++++ K       +E      + +E   +DW   F +  LP                 + ++ +  +L+ L  ++LDL+ + L ++   +K+ F   NG     +++ YPPCP PE + GL  H+D   L +
Sbjct:    2 ENFPIINLEGLNGEGRKATMEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVASKGLEA-----VKTEVNDMDWESTFYLRHLP--KSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLIL 185          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 51/187 (27.27%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  137 PVIDMHTLLSGDDSE----LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQ--PGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF--ENGMQ-SLRMNYYPPCPQPEQVLGL*PHSD 670
            P+IDM  L + +  E    L+++  AC  WGFFQ++NH +S  L++KV+   +E +       KKF +Q     ++  G +   S+   +DW   F +   PT                  ++ +  +++ L+ ++LDL+ + L ++   +K  F   NG     +++ YPPCP+P+ + GL  H+D
Sbjct:    8 PIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHY-------KKFREQKFKDMVQTKGLVSAESQVNDIDWESTFYLRHRPTSNISEVPDLDDQYRKL--MKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTD 185          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 43/184 (23.37%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  131 QLPVIDMHTLLSGD-DSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGL*PHSD 670
            + PV+D+  L+  + D  +  ++ AC+ WGFF+++NHG+   L++  +   +E + + +++K     +   +E      +  E + +DW   F +  LP                   ++ +   L+NL   +LDL+ + L ++   +K++F   +      +++ YP CP+PE + GL  H+D
Sbjct:    6 KFPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLEN-----LEREVEDVDWESTFYLRHLPQSNLYDIPDMSDEYRTA--MKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTD 182          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 45/184 (24.46%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  137 PVIDMHTLLSGDDSE---LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGL*PHSD 670
            P+I++  +   DD     LE+++ AC+ WGFF+L+NHG+    ++ V+   ++ +   ++E+ K       +E        +E   +DW   F +  LP                   ++ +  +L+NL  ++LDL+ + L ++   +K+ F   +      +++ YPPCP+P+ + GL  H+D
Sbjct:    5 PIINLENI--NDDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEA-----AQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKI--MKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTD 179          
BLAST of FC929848 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 43/185 (23.24%), Postives = 88/185 (47.57%), Query Frame = 2
Query:  128 QQLPVIDMHTLLSGD-DSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGL*PHSD 670
            +  P+I++  L   + D+ +E +  AC+ WGFF+L+NHG+   +++ V+   +  +   ++++ K       +E      + +E   LDW   F +  LP                 + +  +   L+ L  ++LDL+ + L ++   +K+ F          +++ YPPCP+P+ + GL  H+D
Sbjct:    2 ENFPIINLENLCGAERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPV--SNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTD 179          
The following BLAST results are available for this feature:
BLAST of FC929848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ACCO1_ORYSJ3.542e-1427.171-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ARATH3.542e-1426.341-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO1_DORSP4.626e-1429.411-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO2_DORSP7.890e-1429.631-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO_PEA1.758e-1325.951-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_PRUMU1.139e-1224.611-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_DIACA1.488e-1227.27Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO1_BRAJU2.538e-1223.371-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO1_CUCME5.654e-1224.461-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO4_PETHY7.385e-1223.241-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionC34001A12EF PostHarvC1 Citrus clementina cDNA clone C34001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929848 ID=FC929848; Name=FC929848; organism=Citrus clementina; type=EST; length=690bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGAAAGAGCTGTTTGAAAACGGGATGCAATC
ATTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GNCTTTAGCCTCATTCTGATGGCTCCGTACTCACCATCCT
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