FC930329

Overview
NameFC930329
Unique NameFC930329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  491 VVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            + P+  KHYRGVRQRPWGKFAAEIRDP + G RVWLGTF+T              +RGS+A++NFP
Sbjct:  130 LAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            KHYRGVRQRPWGKFAAEIRDP K G+RVWLGTF+T              +RGS+A+LNFP
Sbjct:  154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 55/150 (36.67%), Postives = 72/150 (48.00%), Query Frame = 2
Query:  239 NGAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPSRG-KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNF 685
            +G  P Y   SS        ++N+  LP  ENDSE+M ++  +  +       Q+   +SD                   P  +V   +  K YRGVR+RPWGKFAAEIRD  +NG RVWLGTFE+              MRGS A+LNF
Sbjct:   11 SGFSPEYSIGSSPDSFSSSSSNNYS-LPFNENDSEEMFLYGLIEQST------QQTYIDSDSQDL---------------PIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  482 APTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            AP V  +  +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF+T              +RGS+A+LNFP
Sbjct:   61 APVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            +HYRGVR+RPWGKFAAEIRDPAK G+R+WLGTFE+              +RG +A+LNFP
Sbjct:  105 RHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            +HYRGVR+RPWGKFAAEIRDPAK G+R+WLGTFE+              +RG +A+LNFP
Sbjct:  108 RHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  503 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            R +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET               +GS+A LNFP R+
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 44/100 (44.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  398 QEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            +++L +SD+HQ                  P     R +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET               +G++A LNFP R+
Sbjct:   18 KQELDKSDQHQ------------------PDQDQPRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            +HYRGVR+RPWGK+AAEIRDP K G R+WLGT++T              +RG +A+LNFP
Sbjct:   86 RHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            +RGVR+RPWGKFAAEIRDP++NGAR+WLGTFET              +RG  A+LNFP
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77          
The following BLAST results are available for this feature:
BLAST of FC930329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ERF5_NICSY1.742e-1657.58Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH1.742e-1665.00Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF92_ARATH2.972e-1636.67Ethylene-responsive transcription factor 1B OS=Ara... [more]
EF105_ARATH2.972e-1656.52Ethylene-responsive transcription factor ERF105 OS... [more]
EF107_ARATH1.927e-1560.00Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH1.927e-1560.00Ethylene-responsive transcription factor ERF106 OS... [more]
EF114_ARATH1.631e-1460.00Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH2.130e-1444.00Ethylene-responsive transcription factor ERF113 OS... [more]
EF104_ARATH3.633e-1455.00Ethylene-responsive transcription factor ERF104 OS... [more]
ERF98_ARATH4.745e-1460.34Ethylene-responsive transcription factor ERF098 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006C08EF PostHarvC1 Citrus clementina cDNA clone C34006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930329 ID=FC930329; Name=FC930329; organism=Citrus clementina; type=EST; length=697bp
GAGGTTGCAGTTGCACACTCACAATTCACAAAGAAAGTTAACGACAAGGA
ATAGGAAATATATACATAAACCAATTTCTGTTTTTAAATCCGGAAGCAAA
ATGCACGGACACAGTAGTAGTGGTGGTAGTATGAATATGATGCCGTCGGA
TTATGCTGTGCTGGATTCAGTTCGCCAGCACTTACTCGGCGAATCGGAGA
CTGGACTGAGCAGCGTGTCATCAGCGAGTTCCAAGTCCAACGGGGCTCCC
CCTACTTATTTCAGGAGCTCAAGCTTTAGCCGATTGTACCCATGTCTAAC
GGACAACTGGGGGGACCTCCCTTTGAGGGAGAACGACTCCGAGGACATGC
TTGTCTTTAATTTCTTGCGTGATGCCCTAACAGTTGGATGGGTTCCACAG
GAGCAGTTAGCCGAATCTGATCGCCATCAGGTGGCGGAAGTGGCGCCGGC
ACCGGCGTTACCGGAGGAGCGAGGTGCTCCGGCTCCTACAGTGGTGCCTT
CTAGGGGGAAGCATTACAGGGGGGTTAGGCAGAGACCTTGGGGGAAGTTT
GCGGCCGAAATACGTGACCCGGCTAAGAATGGGGCTCGGGTTTGGCTCGG
GACTTTCGAGACGGCTGAGGATGCGGCTCTGGCTTATGACCGAGCCGCTT
ACAGGATGAGGGGATCAAGGGCTCTTTTGAATTTTCCCCCTAGGATC
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