FC930329

Overview
NameFC930329
Unique NameFC930329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRGVR+RPWGK+AAEIRD A++GARVWLGTF T              MRG RA+LNFP
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  503 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPR 694
            R +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET               +GS+A LNFP R
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQK-AARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPER 150          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 36/72 (50.00%), Postives = 42/72 (58.33%), Query Frame = 2
Query:  473 GAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            G  A        K YRGVR+RPWGKFAAEIRD  + G RVWLGTF+T              ++GS A+LNFP
Sbjct:   68 GKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 38/65 (58.46%), Postives = 41/65 (63.08%), Query Frame = 2
Query:  503 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            R K YRGVRQRPWGK+AAEIRDP K   RVWLGTFET               RGS+A LNFP  +
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENV 120          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  500 SRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            SR ++YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+T               RG +A LNFP  I
Sbjct:   65 SRQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHI 129          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRGVR+RPWGK+AAEIRD  K+G RVWLGTF+T              MRG  A+LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRGVR+RPWGK+AAEIRD  K+G RVWLGTF+T              MRG  A+LNFP
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFP 72          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  470 RGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPP 691
            R    P VV +  + +RGVRQRPWGK+AAEIRDP++   RVWLGTF+T              +RG  A LNFPP
Sbjct:   72 RVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPP 144          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 37/58 (63.79%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRGVRQRPWGKFAAEIRDP K   RVWLGTFET               RG RA LNFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  503 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            R   YRG+RQRPWGK+AAEIRDP + GAR+WLGTF+T              +RGS+A +NFP
Sbjct:  121 RKNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFP 181          
The following BLAST results are available for this feature:
BLAST of FC930329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ERF95_ARATH4.745e-1462.07Ethylene-responsive transcription factor ERF095 OS... [more]
EF115_ARATH4.745e-1460.94Ethylene-responsive transcription factor ERF115 OS... [more]
ERF94_ARATH3.076e-1350.00Ethylene-responsive transcription factor ERF094 OS... [more]
RAP26_ARATH6.852e-1358.46Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF112_ARATH6.852e-1357.58Ethylene-responsive transcription factor ERF112 OS... [more]
ERF97_ARATH8.949e-1358.62Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF96_ARATH8.949e-1358.62Ethylene-responsive transcription factor ERF096 OS... [more]
CRF1_ARATH8.949e-1350.00Ethylene-responsive transcription factor CRF1 OS=A... [more]
EF109_ARATH1.994e-1263.79Ethylene-responsive transcription factor ERF109 OS... [more]
RA212_ARATH2.604e-1254.84Ethylene-responsive transcription factor RAP2-12 O... [more]

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Properties
Property NameValue
Genbank descriptionC34006C08EF PostHarvC1 Citrus clementina cDNA clone C34006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930329 ID=FC930329; Name=FC930329; organism=Citrus clementina; type=EST; length=697bp
GAGGTTGCAGTTGCACACTCACAATTCACAAAGAAAGTTAACGACAAGGA
ATAGGAAATATATACATAAACCAATTTCTGTTTTTAAATCCGGAAGCAAA
ATGCACGGACACAGTAGTAGTGGTGGTAGTATGAATATGATGCCGTCGGA
TTATGCTGTGCTGGATTCAGTTCGCCAGCACTTACTCGGCGAATCGGAGA
CTGGACTGAGCAGCGTGTCATCAGCGAGTTCCAAGTCCAACGGGGCTCCC
CCTACTTATTTCAGGAGCTCAAGCTTTAGCCGATTGTACCCATGTCTAAC
GGACAACTGGGGGGACCTCCCTTTGAGGGAGAACGACTCCGAGGACATGC
TTGTCTTTAATTTCTTGCGTGATGCCCTAACAGTTGGATGGGTTCCACAG
GAGCAGTTAGCCGAATCTGATCGCCATCAGGTGGCGGAAGTGGCGCCGGC
ACCGGCGTTACCGGAGGAGCGAGGTGCTCCGGCTCCTACAGTGGTGCCTT
CTAGGGGGAAGCATTACAGGGGGGTTAGGCAGAGACCTTGGGGGAAGTTT
GCGGCCGAAATACGTGACCCGGCTAAGAATGGGGCTCGGGTTTGGCTCGG
GACTTTCGAGACGGCTGAGGATGCGGCTCTGGCTTATGACCGAGCCGCTT
ACAGGATGAGGGGATCAAGGGCTCTTTTGAATTTTCCCCCTAGGATC
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