FC930329

Overview
NameFC930329
Unique NameFC930329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            + YRGVR+RPWGKFAAEIRD  +NG RVWLGTF+                +GS A LNFP  +
Sbjct:   84 RSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEV 146          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRG+RQRPWGK+AAEIRDP+K G RVWLGTF+T              +RG +A LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  485 PTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            P     + + YRGVRQRPWGK+AAEIRDP +  ARVWLGTF+T               RG++A LNFP
Sbjct:   67 PEEAREKKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  509 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+                RG++A LNFP  +
Sbjct:  183 RRYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  503 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            R   YRG+RQRPWGK+AAEIRDP K G+R WLGTF+T              +RG++A +NFP
Sbjct:  124 RKNQYRGIRQRPWGKWAAEIRDPRK-GSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  515 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YRG+R+RPWGK+AAEIRDP K G RVWLGTF T              +RG +A LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 2
Query:  473 GAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            G  A +    R   +RG+RQRPWGK+AAEIRDP K G RVWLGTF +              +RG +A +NFP
Sbjct:  106 GPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  512 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            H+RGVR+RPWG++AAEIRDP K   RVWLGTF+T               RGS+A  NFP
Sbjct:   32 HFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  512 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            HYRGVR+RPWG++AAEIRDP K  +RVWLGTF+T               RG +A  NFP
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  512 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            HYRGVR+RPWG++AAEIRDP K  +RVWLGTF+T               RG +A  NFP
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of FC930329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ERF93_ARATH5.801e-1252.38Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF71_ARATH7.576e-1258.62Ethylene-responsive transcription factor ERF071 OS... [more]
EF110_ARATH9.894e-1251.47Ethylene-responsive transcription factor ERF110 OS... [more]
ABR1_ARATH1.688e-1153.97Ethylene-responsive transcription factor ABR1 OS=A... [more]
RAP22_ARATH2.204e-1153.23Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP23_ARATH3.760e-1156.90Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF1_ORYSJ3.760e-1147.22Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF80_ARATH4.910e-1154.24Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC4.910e-1154.24Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY4.910e-1154.24Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC34006C08EF PostHarvC1 Citrus clementina cDNA clone C34006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930329 ID=FC930329; Name=FC930329; organism=Citrus clementina; type=EST; length=697bp
GAGGTTGCAGTTGCACACTCACAATTCACAAAGAAAGTTAACGACAAGGA
ATAGGAAATATATACATAAACCAATTTCTGTTTTTAAATCCGGAAGCAAA
ATGCACGGACACAGTAGTAGTGGTGGTAGTATGAATATGATGCCGTCGGA
TTATGCTGTGCTGGATTCAGTTCGCCAGCACTTACTCGGCGAATCGGAGA
CTGGACTGAGCAGCGTGTCATCAGCGAGTTCCAAGTCCAACGGGGCTCCC
CCTACTTATTTCAGGAGCTCAAGCTTTAGCCGATTGTACCCATGTCTAAC
GGACAACTGGGGGGACCTCCCTTTGAGGGAGAACGACTCCGAGGACATGC
TTGTCTTTAATTTCTTGCGTGATGCCCTAACAGTTGGATGGGTTCCACAG
GAGCAGTTAGCCGAATCTGATCGCCATCAGGTGGCGGAAGTGGCGCCGGC
ACCGGCGTTACCGGAGGAGCGAGGTGCTCCGGCTCCTACAGTGGTGCCTT
CTAGGGGGAAGCATTACAGGGGGGTTAGGCAGAGACCTTGGGGGAAGTTT
GCGGCCGAAATACGTGACCCGGCTAAGAATGGGGCTCGGGTTTGGCTCGG
GACTTTCGAGACGGCTGAGGATGCGGCTCTGGCTTATGACCGAGCCGCTT
ACAGGATGAGGGGATCAAGGGCTCTTTTGAATTTTCCCCCTAGGATC
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