FC931788

Overview
NameFC931788
Unique NameFC931788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:9..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 90/172 (52.33%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  178 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            +  WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P+A SE ELR  LGL N TTG  ++       RP+EVFM S
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 91/172 (52.91%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  178 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  K+       RP+E+FM S
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 90/167 (53.89%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  193 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            + VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 167          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 88/172 (51.16%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  178 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+E+FM S
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 89/177 (50.28%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  175 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFM S
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCS 179          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 88/169 (52.07%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  187 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID  +A SE ELR  LGL N TTG  ++       RP+EVFM S
Sbjct:    8 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCS 171          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 73/167 (43.71%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  184 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 684
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL  S+ RPLEVF
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVF 170          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 63/175 (36.00%), Postives = 82/175 (46.86%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MFL+DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK               P L+LG+K D     + E L   L +  F  G     L +SN  P ++ M S
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELG-----LNNSNNVPFDLIMTS 170          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  217 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIP-HAASEEELRY 603
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT +P++  + IG +K +  DLGGH  AR  W                   ERF E ++              P +VL NKID+  H     E  Y
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVRE--AYETVLSLEKRAPVVVLMNKIDLEGHTPETAEADY 158          
The following BLAST results are available for this feature:
BLAST of FC931788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_YEAST3.236e-3952.33Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_KLULA4.226e-3952.91Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_PHANO1.230e-3853.89Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_ASHGO2.097e-3851.16Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1A_MOUSE2.097e-3850.28GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_CANGA6.103e-3852.07Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA1.456e-3143.71GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI1.510e-2036.00GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU5.202e-1334.62Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionC34201B12EF PostHarveN Citrus clementina cDNA clone C34201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931788 ID=FC931788; Name=FC931788; organism=Citrus clementina; type=EST; length=694bp
GGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGCTCATCTTA
GGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCG
TTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCT
AATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGT
GCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAG
GGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAG
AGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAG
TATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTG
CTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATAC
CTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACT
GGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGT
TAGGAAACAAGATTGACATCCCTCATGCTGCTTCTGAGGAAGAGTTGCGT
TACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCT
AGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGCGTAGCA
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