FC931874

Overview
NameFC931874
Unique NameFC931874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  278 ATVGEVTEVNKDTFWPI---VKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKY-SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            A  G+V   ++   W +        +K +V+D    WC PC++IAP F +LAKK+ S  IF K+D + E +++A+E G+  +PTF ++KD  VV +V GA+ EDL
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVD-ELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDL 106          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  344 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDA 598
            DK VV+D +  WCGPCK IAPKF++ +  YSD  F+K+D +Q ++ +A E G+  +P+F + K+ + ++E+ GA    L  +I A
Sbjct:   18 DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSE-IAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKA 101          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 592
            +K+ F   + AAGDK VV+D    WCGPCK+I P F  L  KYS+V+FL++D + + + +A +  ++ +PTF+  K  + V E +GA  E L  +I
Sbjct:    7 SKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD-DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASI 101          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +K+ F   + AAGDK VV+D    WCGPCK+I P F  L  KYS+V+FL++D + + + +A +  ++ +PTF+  K  + V E +GA  E L
Sbjct:    7 SKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD-DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKL 97          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L
Sbjct:    7 SKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKL 97          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 595
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATIN 102          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 595
            +K  F   +  AGDK VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKAAFQEALDDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 595
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  347 KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            + V +D    WCGPC+VI P F EL+KK+ ++ FLK+D + E + +A+E  +  +PTF  +KD K V +V GAK +DL
Sbjct:   27 RLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVD-ELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDL 103          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  284 VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 592
            VG++TE   +     +  AG K +V+D    WCGPCK+I P F  + +KY DV+F+++D + + + +A    ++ +PTF+  K+N+ V E +GA  E L  AI
Sbjct:    5 VGDLTEFRAE-----LSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVD-DAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAI 101          
The following BLAST results are available for this feature:
BLAST of FC931874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TRXH2_BRANA2.875e-1439.05Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRX1_SCHPO2.875e-1441.18Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_MOUSE2.875e-1440.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_RAT3.755e-1441.30Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_HORSE3.755e-1440.22Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP4.905e-1439.18Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_MACMU4.905e-1440.21Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_PIG6.406e-1439.18Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
TRXH_PICMA8.366e-1444.87Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
THIO_OPHHA8.366e-1436.89Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC34202B04EF PostHarveN Citrus clementina cDNA clone C34202B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931874 ID=FC931874; Name=FC931874; organism=Citrus clementina; type=EST; length=711bp
GACGGAACACAAAACACATATTTTTGTTACTTCACTCTCCACCACAAAAA
TCAAAATGTCTTTACTCCAATTCTCCTCCACCACGGTCCGATCTCCGACG
TCGGTACCGTGCTCCGGGAATCACCAGATCACAGCCTCTGCTTTCTCAGC
GGGAGTCTCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTAGCGA
AGAAGGCGAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACG
GTGAGATCGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGA
AGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGA
CTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATA
GCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCT
AAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAA
TAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGTTGTAAAG
GAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCATTGATGCTGT
TAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAAAACTATAGC
AATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATTGGTCCACTT
GTATGTATTTA
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