FC931874

Overview
NameFC931874
Unique NameFC931874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  326 IVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA---KLEDLVFA 589
            + KA+G K VVLD +  WCGPCK+I+PK  EL+ +++D V+ LK+D + E + +A E  I  +PTF  LK+   V+E  GA   +LED++ A
Sbjct:   23 LTKASG-KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD-ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 112          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVR 604
            +K+ F  ++K AG+K V +D    WCGPC+++ P F  L+ K+ DVIFL++D  ++ + L ++  I  +PTF+  K+ + V E +GA +  L  +I  ++
Sbjct:  417 DKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVD-TEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISELK 515          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  344 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRS 607
            +K +V+D    WCGPC++I P    +A K++DV F+KLD + E   +AKE  +  +PTF ++K  K ++ + GAK ++L   +  +R+
Sbjct:   47 NKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVD-ELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA 133          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  329 VKAA--GDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +KAA   +K +V+D    WC PC+ IAP F ELAKK+ DV+F K+D + E  ++AKE  ++ +PTF  +K  + + +V GA  E++
Sbjct:   26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVD-ELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TXND8_RAT (Thioredoxin domain-containing protein 8 OS=Rattus norvegicus GN=Txndc8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 31/77 (40.26%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  317 FWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVV 547
            F  ++ AAG++ VV++   QWCGPCK+IAP FQ ++ +Y +V+F ++D +  ++ L +   I+VVPTF++ K ++ V
Sbjct:   11 FKELLGAAGNRLVVVEFSAQWCGPCKMIAPAFQAMSLQYRNVMFAQVDVD-SSQELTEHCSIQVVPTFQMFKHSRKV 86          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  329 VKAA--GDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +KAA   +K +V+D    WC PC+ IAP F ELAKK+ DV+F K+D + E  ++A+E  ++ +PTF  +K  + + +V GA  E++
Sbjct:   26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVD-ELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  329 VKAA--GDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +KAA   +K +V+D    WC PC+ IAP F ELAKK+ DV+F K+D + E  ++A+E  ++ +PTF  +K  + + +V GA  E++
Sbjct:   26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVD-ELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 31/84 (36.90%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  347 KTVVLDMYTQWCGPCKVIAPKFQELAKKY--SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAK---LEDLV 583
            K +++D +  WCGPC+VI+P F++ ++KY  ++++F K+D +  +  +++E  IR +PTF++ KD + + E+ GA    LE LV
Sbjct:   19 KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTAS-DISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLV 101          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKK--YSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            N + F   +K AGDK VV+D    WCGPC+ I P F+ L+K   Y +V+FLK+D + +   ++    I+ +PTF   K+ + + E +GA  + L
Sbjct:    7 NLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVD-DAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTL 99          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 29/88 (32.95%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  317 FWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            F  +++   +K ++LD Y  WCGPCK IAP ++ELA  +  +IF K+D + E + L  +  ++++PTF   K+   ++ + G   ++L
Sbjct:   18 FEQLIRQHPEKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVD-EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDEL 104          
The following BLAST results are available for this feature:
BLAST of FC931874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
THIO2_DROME4.591e-1244.57Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TXND2_MOUSE5.996e-1235.00Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXH2_ARATH5.996e-1236.36Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_BRARA7.830e-1241.86Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TXND8_RAT2.278e-1140.26Thioredoxin domain-containing protein 8 OS=Rattus ... [more]
TRXH_BRAOL2.278e-1140.70Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA2.278e-1140.70Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
THIO_COPCM3.886e-1136.90Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_ICTPU5.076e-1137.23Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO1_CAEEL5.076e-1132.95Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34202B04EF PostHarveN Citrus clementina cDNA clone C34202B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931874 ID=FC931874; Name=FC931874; organism=Citrus clementina; type=EST; length=711bp
GACGGAACACAAAACACATATTTTTGTTACTTCACTCTCCACCACAAAAA
TCAAAATGTCTTTACTCCAATTCTCCTCCACCACGGTCCGATCTCCGACG
TCGGTACCGTGCTCCGGGAATCACCAGATCACAGCCTCTGCTTTCTCAGC
GGGAGTCTCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTAGCGA
AGAAGGCGAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACG
GTGAGATCGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGA
AGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGA
CTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATA
GCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCT
AAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAA
TAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGTTGTAAAG
GAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCATTGATGCTGT
TAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAAAACTATAGC
AATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATTGGTCCACTT
GTATGTATTTA
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