FC932379

Overview
NameFC932379
Unique NameFC932379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 45/193 (23.32%), Postives = 91/193 (47.15%), Query Frame = 2
Query:   95 IFSNEVCEKLAVVGFNTNMISYLTTQLH-MPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS---------------AILPKLRPPPCEGEQVCQEANKGQVA-ILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            +  +E+ E++A  G  +N++ +L  Q+     T+A+  L  F G   L      ++ADA  GRF+ I  + ++Y +GM+   +                A +          +  C E ++   A  L++ L++  +G G ++  +  FGADQ  +  P+    T ++FNW+Y+ +    ++++  + Y+Q N
Sbjct:   37 VLLSELLERVAFYGITSNLVLFLNGQIFGWEGTQASQALLLFMGITYLVSPFAGWLADALLGRFYVILGSMVLYLLGMLLFPMVSYSGTRTAFCGDIQWAQIENCSRSNASSDDTCPEPSRRYCAPALFLGLIIVGLGVGSVKANITPFGADQVKDRGPE---ATRRFFNWFYWSINLGAIISLGGVAYVQQN 226          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A3_MOUSE (Solute carrier family 15 member 3 OS=Mus musculus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 49/185 (26.49%), Postives = 94/185 (50.81%), Query Frame = 2
Query:  107 EVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIY--QIGMICLTIS--------AILPKLRPPPCEGEQVCQEANKGQ--VAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            ++ E+ A  G  +N++ YL +   +    +A+     F G   L   +G ++AD Y GRF TI+++ ++Y    G++  TI+          +P+L   P      CQ +         LY+ LLL A+ +  +R  + +FGADQ  +   + AT+  ++FNW+Y+ +    ++++ V+ +I+ N
Sbjct:   42 QMLERAAFFGVTSNLVLYLNSLNFNWDGQQASRATLLFLGASYLLAPVGGWLADVYLGRFLTISLSLLLYLAASGLLLTTITNDGRRSFCGEMPELPLEPACPSSSCQGSWSSPYCATTLYLVLLLLALAASSVRSTLTSFGADQVMDLG-RDATR--RFFNWFYWSINLGAILSLLVVAFIEQN 223          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A3_RAT (Solute carrier family 15 member 3 OS=Rattus norvegicus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 49/185 (26.49%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  107 EVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIY--QIGMICLTIS--------AILPKLRPPPCEGEQVCQEANKGQ--VAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            E+ E+ A  G  +N++ YL +   +     A+     F G   L   +G ++AD Y GRF  I+++ ++Y    G++  TI+          +P+L   P      CQ +         LY+ LLL A+ +  +R  + +FGADQ  +   + AT+  ++FNW+Y+ +    ++++ V+ +I+ N
Sbjct:   42 EMLERAAFFGVTSNLVLYLNSLNFNWDGEHASRATLLFLGASYLLAPVGGWLADVYLGRFLAISLSLLLYLAATGLLLTTITDDGRRSFCGEMPELPLKPACPSANCQGSWSSPYCATTLYLVLLLLALAASSVRSNLTSFGADQVMDLG-RDATR--RFFNWFYWSINLGAILSLLVVAFIEQN 223          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A5_HUMAN (Solute carrier family 15 member 5 OS=Homo sapiens GN=SLC15A5 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 56/211 (26.54%), Postives = 91/211 (43.13%), Query Frame = 2
Query:    2 IHTQKMIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEG------EQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ 616
            I  +K + ++ +  S+  VK+ + G+  +      E+CE+        NMI + T +L     +AA     F GT  LTP+   ++ D Y GR   + I   ++ +G   L++ A        P E         V       Q  + YV+LL   +G GG+R  V   GA    E     + KT  +FNW+Y++M     +    + YIQ
Sbjct:   19 IEKEKTVRHIGDLCSSHSVKKIQVGICLLLV----ELCERFTFFEVVCNMIPFCTIKLGYHNCQAAILNLCFIGTSILTPVFVRWLTDVYLGRNKLVYICLFLHFLGTALLSVVAF-------PLEDFYLGTYHAVNNIPKTEQHRLFYVALLTICLGIGGVRAIVCPLGAFGLQEYG---SQKTMSFFNWFYWLMNLNATIVFLGISYIQ 215          
The following BLAST results are available for this feature:
BLAST of FC932379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
S15A4_XENLA7.454e-1323.32Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A3_MOUSE1.271e-1226.49Solute carrier family 15 member 3 OS=Mus musculus ... [more]
S15A3_RAT8.241e-1226.49Solute carrier family 15 member 3 OS=Rattus norveg... [more]
S15A5_HUMAN6.977e-1126.54Solute carrier family 15 member 5 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34208A03EF PostHarveN Citrus clementina cDNA clone C34208A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932379 ID=FC932379; Name=FC932379; organism=Citrus clementina; type=EST; length=735bp
GATCCACACACAGAAAATGATAGAAAATATGGAGGAAAAAGGAAGCAACA
GCCATGTCAAAAGACAAAAGGGTGGCATGATCACCATGCCCTTCATTTTT
TCAAATGAGGTCTGCGAGAAGTTAGCTGTGGTGGGGTTTAACACTAATAT
GATTAGCTACTTAACGACACAACTGCACATGCCATTAACCAAAGCTGCCA
ACACTCTCACCAACTTTAGAGGAACCGGCAGCTTGACTCCGTTGATCGGA
GCCTTCGTCGCCGATGCTTACGCCGGTCGCTTTTGGACTATAACTATAGC
TTCCATCATTTATCAAATTGGAATGATTTGCTTGACAATCTCAGCAATTC
TACCAAAACTAAGGCCACCGCCATGTGAAGGTGAACAAGTTTGCCAAGAA
GCTAATAAAGGACAGGTAGCAATCTTATATGTCTCCCTTCTCCTCGCTGC
TATCGGGTCGGGTGGAATCCGACCCTGTGTGGTGGCATTTGGCGCGGACC
AATTTGACGAGACGGACCCCAAACAAGCAACAAAGACATGGAAATATTTT
AATTGGTATTATTTTGTCATGGGGGCAGCAATACTAGTGGCTGTGACAGT
TCTTGTTTATATTCAAGATAATATTGGATGGGGATGGGGCCTCGGTATTC
CACTTTTGCCATGTTTCTTTCAATCATTGCGTTCTTGATCGGGTACCCAC
TTTACCGGAACTTGGATCCGGCTGGGAGTCCGTTT
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