FC932379

Overview
NameFC932379
Unique NameFC932379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.066e-49
Identity = 92/192 (47.92%), Postives = 125/192 (65.10%), Query Frame = 2
Query:   47 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T ++GT  LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A   Q A+ +  L L A+G+GGI+PCV +FGADQFD+TD ++  +   +FNW+YF +    LV+ ++LV+IQ+N
Sbjct:   35 NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQEN 225          

HSP 2 Score: 31.5722 bits (70), Expect = 4.066e-49
Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 1
Query:  631 GMGPRYSTFAMFLSIIAFLIGYPLYRNLDPAGSP 732
            G+G    T  M L+I +F  G PLYR   P GSP
Sbjct:  229 GLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSP 262          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.347e-46
Identity = 91/207 (43.96%), Postives = 128/207 (61.84%), Query Frame = 2
Query:    2 IHTQKMIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            ++TQ    ++ +  +N   K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT  +TPLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +      N  Q A+ +V+L + A+G+GGI+PCV +FGADQFDE D  +  K   +FNW+YF +    L+A TVLV+IQ N
Sbjct:    6 VYTQDGTVDIHKNPAN---KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTC--HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMN 207          

HSP 2 Score: 25.7942 bits (55), Expect = 2.347e-46
Identity = 13/34 (38.24%), Postives = 16/34 (47.06%), Query Frame = 1
Query:  631 GMGPRYSTFAMFLSIIAFLIGYPLYRNLDPAGSP 732
            G G    T AM +++  F  G   YR   P GSP
Sbjct:  211 GWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSP 244          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.195e-46
Identity = 94/207 (45.41%), Postives = 132/207 (63.77%), Query Frame = 2
Query:    2 IHTQKMIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            I+T+    ++ +K +N   K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +++N+ GT   TPLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L  P C GE     A  GQ AI +++L L A+G+GGI+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +VLV+IQ N
Sbjct:    7 IYTKDGTLDIHKKPAN---KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETC--HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMN 207          

HSP 2 Score: 27.335 bits (59), Expect = 5.195e-46
Identity = 13/34 (38.24%), Postives = 17/34 (50.00%), Query Frame = 1
Query:  631 GMGPRYSTFAMFLSIIAFLIGYPLYRNLDPAGSP 732
            G G    T AM ++++ F  G   YR   P GSP
Sbjct:  211 GWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSP 244          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.895e-43
Identity = 82/190 (43.16%), Postives = 119/190 (62.63%), Query Frame = 2
Query:   59 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQV--CQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            + Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT  LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++A+  Q+A+ + +L   AIG+GG +P +   GADQFDE DPK       +FNW+ F +      A TVLVY+QDN
Sbjct:   25 RSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDN 214          

HSP 2 Score: 31.9574 bits (71), Expect = 3.895e-43
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  634 MGPRYSTFAMFLSIIAFLIGYPLYRNLDPAGSPF 735
            +G   ST  +  SI  FL+G  LYR+  P GSPF
Sbjct:  219 IGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPF 252          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.690e-41
Identity = 77/179 (43.02%), Postives = 115/179 (64.25%), Query Frame = 2
Query:   92 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQV--CQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+  Q+A+ + +L   AIG+GG +P +   GADQFD  DPK+ T+   +FNW+ F +    L A TVLVY+QDN
Sbjct:   36 FVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDN 214          

HSP 2 Score: 33.113 bits (74), Expect = 2.690e-41
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  634 MGPRYSTFAMFLSIIAFLIGYPLYRNLDPAGSPF 735
            +G    T  + +SI  FL+G P YR+  P GSPF
Sbjct:  219 LGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPF 252          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.954e-41
Identity = 85/192 (44.27%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   59 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQV---CQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + TPL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LP+++P PC+       C  +   Q+A+LY +  L +IGSGGIRPC +AFGADQ D + +PK       +F WYY     A+L+A T +VYIQ++
Sbjct:   19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEH 210          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 79/190 (41.58%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   59 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCE--GEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 622
            + + GG  +   I   E  E+L  +G   N+++YLT  +H+    AANT+TNF GT  +  L+G F+AD + GR+ TI I + I   G+  LT+S I+P LRPP C       C++A+  Q+ +LY++L L A+G+GG++  V  FG+DQFDET+PK+ +K   +FN ++F +    L+AVTVLVY+QD+
Sbjct:   25 RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDD 214          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: PEPT1_DROME (Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.372e-22
Identity = 63/192 (32.81%), Postives = 99/192 (51.56%), Query Frame = 2
Query:   23 ENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 598
            +N +++ S+S +        ++ FI SNE CE+    G  T ++ YLT +L      A      F     + PLIGA +AD + G++ TI   S++Y +G + ++  A+       P  G            A+  V LLL AIG+GGI+PCV AFG DQF  + P Q+ +  K+F+ +YF + A  L++ T
Sbjct:   15 KNGQKEESDSQIAPPIPYPKSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYSLGAMVVSFGAV-------PLSGMPT--------KAVTVVGLLLIAIGTGGIKPCVSAFGGDQF--SLPAQSFQLAKFFSLFYFAINAGSLISTT 189          

HSP 2 Score: 24.6386 bits (52), Expect = 6.372e-22
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  661 MFLSIIAFLIGYPLYRNLDPAGS 729
            M  S+I F+ G  LYR   PAG+
Sbjct:  218 MIFSVIIFMAGKRLYRCQPPAGN 240          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A1_RABIT (Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.246e-20
Identity = 60/184 (32.61%), Postives = 98/184 (53.26%), Query Frame = 2
Query:   71 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA--VTVLVYIQ 616
            G  +++ FI  NE CE+ +  G    +I Y    +      +      F     LTP++GA +ADA+ G+F TI   SI+Y IG    ++S++  +L     +G     ++    VA+  + LLL A+G+GGI+PCV AFG DQF+E   KQ     ++F+ +Y  + A  L++  +T +V +Q
Sbjct:   11 GYPLSIFFIVVNEFCERFSYYGMRALLILYFRNFIGWDDNLSTVIYHTFVALCYLTPILGALIADAWLGKFKTIVWLSIVYTIGQAVTSLSSV-NELTDNNHDGTP---DSLPVHVAVCMIGLLLIALGTGGIKPCVSAFGGDQFEEGQEKQRN---RFFSIFYLAINAGSLLSTIITPMVRVQ 187          

HSP 2 Score: 24.2534 bits (51), Expect = 7.246e-20
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  661 MFLSIIAFLIGYPLYRNLDPAGS 729
            M +S+I F+IG  +Y+   P G+
Sbjct:  209 MAVSLIVFIIGSGMYKKFKPQGN 231          
BLAST of FC932379 vs. ExPASy Swiss-Prot
Match: S15A2_HUMAN (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 54/174 (31.03%), Postives = 89/174 (51.15%), Query Frame = 2
Query:   80 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFRGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPKLRPPPCEGEQVCQEANKGQVAILYVSLLLAAIGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV 601
            +++ FI  NE CE+ +  G    +I Y    LH     + +    F      TP++GA +AD++ G+F TI   S++Y +G +  ++ A+       P  G QV          +  + L L A+G+GGI+PCV AFG DQF+E   K A +  +YF+ +Y  + A  L++  +
Sbjct:   44 LSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGAL-------PILGGQVV------HTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEE---KHAEERTRYFSVFYLSINAGSLISTFI 201          
The following BLAST results are available for this feature:
BLAST of FC932379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PTR2_ARATH4.066e-4947.92Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH2.347e-4643.96Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH5.195e-4645.41Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH3.895e-4343.16Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH2.690e-4143.02Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2X_ARATH4.954e-4144.27Probable peptide transporter At1g52190 OS=Arabidop... [more]
CHL1_ARATH1.594e-3941.58Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PEPT1_DROME6.372e-2232.81Peptide transporter family 1 OS=Drosophila melanog... [more]
S15A1_RABIT7.246e-2032.61Solute carrier family 15 member 1 OS=Oryctolagus c... [more]
S15A2_HUMAN1.551e-1831.03Solute carrier family 15 member 2 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208A03EF PostHarveN Citrus clementina cDNA clone C34208A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932379 ID=FC932379; Name=FC932379; organism=Citrus clementina; type=EST; length=735bp
GATCCACACACAGAAAATGATAGAAAATATGGAGGAAAAAGGAAGCAACA
GCCATGTCAAAAGACAAAAGGGTGGCATGATCACCATGCCCTTCATTTTT
TCAAATGAGGTCTGCGAGAAGTTAGCTGTGGTGGGGTTTAACACTAATAT
GATTAGCTACTTAACGACACAACTGCACATGCCATTAACCAAAGCTGCCA
ACACTCTCACCAACTTTAGAGGAACCGGCAGCTTGACTCCGTTGATCGGA
GCCTTCGTCGCCGATGCTTACGCCGGTCGCTTTTGGACTATAACTATAGC
TTCCATCATTTATCAAATTGGAATGATTTGCTTGACAATCTCAGCAATTC
TACCAAAACTAAGGCCACCGCCATGTGAAGGTGAACAAGTTTGCCAAGAA
GCTAATAAAGGACAGGTAGCAATCTTATATGTCTCCCTTCTCCTCGCTGC
TATCGGGTCGGGTGGAATCCGACCCTGTGTGGTGGCATTTGGCGCGGACC
AATTTGACGAGACGGACCCCAAACAAGCAACAAAGACATGGAAATATTTT
AATTGGTATTATTTTGTCATGGGGGCAGCAATACTAGTGGCTGTGACAGT
TCTTGTTTATATTCAAGATAATATTGGATGGGGATGGGGCCTCGGTATTC
CACTTTTGCCATGTTTCTTTCAATCATTGCGTTCTTGATCGGGTACCCAC
TTTACCGGAACTTGGATCCGGCTGGGAGTCCGTTT
back to top