FC932388

Overview
NameFC932388
Unique NameFC932388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 82/230 (35.65%), Postives = 125/230 (54.35%), Query Frame = 1
Query:    7 PESVLKKQKRNEEWAL-----AKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDP---------EAKLLFIIRI----RGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRG-YGKLDKQ----RIA-LTDNSIIEKALG-KFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            PE +L+K+K N+   L     A++++LE  KKN   S+K +  RA+     +   E    ++K   K +     D           AKLLFIIRI    +G+  +  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+R+L  KR     +D++    RI  L +N ++E   G   G IC+EDLI E+ T+G HFK   +++ PFKL AP+ G
Sbjct:    8 PEILLRKRKNNDRKRLEKQEQARQRQLEQKKKNDQRSKKFV--RAETLVSNYKSNELENKRIKHITKFEKQSQADKISQAKEDDESAKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPFKLNAPVSG 234          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 1
Query:   40 EEWALAKKQELETSK-KNKLE----SRKLIYNRAKQYAKEFAEQEKVLIQLKR-----DAKLKGGFYVDPEAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            E+  + + ++LE  K KN L      R  I   +++ A   A  E  L  +       D  ++     D E  LLF+IR++G  A  I  K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S+R LI KR           + + I L DN+I+E+ LG  G+IC+ED+I EI T+G +F +   FL PFKL   + G
Sbjct:   64 EKTRIRRVRDLENQKVKNDLSHIPSDRDFILRISEREAGSKATSESELQDVDEEDEEDDGLIREKIVYDGEPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPFKLNREVSG 275          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 63/144 (43.75%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  214 DPEAKLLFIIRIRGINAIDPKTK--KILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            D +  LLFI+R+RG  A++   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S+R LI KRG        + +   I L DN+I+E+ LG  GIIC+ED+I EI T+G  F     FL PFKL   + G
Sbjct:  136 DGKPALLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNREVSG 279          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 83/261 (31.80%), Postives = 129/261 (49.43%), Query Frame = 1
Query:    7 PESVLKKQKRNEEWALAKKQEL-----ETSKKNKLESRKLIYNRAKQYAKEFA---EQEKVL-IQLKRDAKLKG---------GFYV------------------------------DPEAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRG---YGKLDKQR---IALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            PE +L+K +RN +    +KQEL     E  KK +++++K         A   A   E+E++  I      KLKG          F++                              + E +LLF++R++G  A  I  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS+R LI KR    Y + D++    I L DN+I+E+ LG  G+IC++D+I EI T+G +F +   FL PFKL   + G
Sbjct:   15 PEILLRK-RRNADRTRLEKQELARQRQEQRKKEQIKNKKKFIRAESLVANSLATSREKERIKRISKLEHKKLKGDVSHLPSEKNFFLKVTEKPQSEETDDLIDEDEEDGFEREKVAYNGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPFKLNREVSG 274          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 79/244 (32.38%), Postives = 115/244 (47.13%), Query Frame = 1
Query:    7 PESVLKKQKRNEEWALAKKQELETSK------KNKLESRKLIYNRAKQYAKEFAEQEKVLIQL--KRDAKLKGGFYV-----------------------DPEAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            PE +L+K +RN E    +KQE    +      + +    K +   A   +    E+EK  IQ   KR AK + G                          D  A LLF++R+RG  A  I  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S+R L+ KR        G+     + L DN ++E+ LG  G+IC+ED+I EI T+G  F +   FL PFKL   + G
Sbjct:    8 PEILLRK-RRNAERTRVEKQEAARRRAEAEVRQRRARQHKFVRAEALVASTLATEREKTRIQRVSKRAAKQRAGHVTGGEWLVRVRAAADGGLEREKTAYDGRATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPFKLGREVSG 250          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 60/205 (29.27%), Postives = 113/205 (55.12%), Query Frame = 1
Query:    7 PESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            P+S ++K++     +  + ++ +  ++ K  + +      ++   ++ EQE+ +++ K  + +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +R+L+Y +G G+    R+ LT+  I +   GK  I C+E+L+  I      FK+   FL+PF L  P GG
Sbjct:    9 PQSSIRKKEYEARMSRIRSRQEKEFRERKSANARYAEETTEKLLNKYYEQEREILEKK--SSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPPRGG 209          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 52/139 (37.41%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  229 LLFIIRIRG-INA-IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKL------DKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            L  I+R  G + A I  K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++VR+L+ KR    +      + +++ L DN+++E+ LG  GIIC+ED+I E   +   FK   HFL PF+L   + G
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPFELNKDVVG 170          
The following BLAST results are available for this feature:
BLAST of FC932388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_DEBHA1.152e-2635.65Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_KLULA3.137e-2435.38Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_YEAST1.192e-2343.75Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA2.656e-2331.80Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO4.530e-2332.38Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU1.009e-2229.2760S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_PICJA9.775e-1837.41Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionC34208A12EF PostHarveN Citrus clementina cDNA clone C34208A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932388 ID=FC932388; Name=FC932388; organism=Citrus clementina; type=EST; length=624bp
CCAGTTCCAGAGTCTGTCTTGAAGAAGCAGAAGAGGAATGAGGAATGGGC
TTTGGCAAAGAAGCAGGAGCTTGAAACTTCCAAGAAGAACAAGCTCGAGA
GTAGGAAGCTGATTTACAATAGGGCTAAGCAGTATGCAAAGGAGTTTGCT
GAGCAGGAAAAGGTGTTGATTCAATTGAAGCGTGATGCTAAATTGAAAGG
AGGGTTTTATGTTGACCCTGAAGCTAAGCTTTTGTTTATCATCCGTATCC
GTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAGCTTTTA
CGTTTAAGACAGATCTTCAATGGAGTTTTTCTTAAAGTGAACAAAGCTAC
CATGAACATGCTTCATAGGGTTGAACCTTACGTCACCTATGGATACCCCA
ATTTGAAGAGTGTTAGGGAGCTCATTTACAAGAGGGGATATGGAAAGCTA
GATAAGCAGAGAATTGCTTTGACCGATAACTCAATTATTGAGAAGGCTTT
GGGCAAGTTCGGTATCATCTGCATGGAAGACCTGATCCGTGAGATTATGA
CAGTGGGACCTCATTTTAAGGAGGCTAAACACTTTTTATGGCCATTTAAG
CTCAAGGCACCATTGGGTGGCCTG
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