FC932651
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 372.474 bits (955), Expect = 1.238e-102 Identity = 188/234 (80.34%), Postives = 209/234 (89.32%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 TLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDGK+ R+L P A E+K+A +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI Sbjct: 657 TLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 889
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 8.611e-88 Identity = 177/261 (67.82%), Postives = 200/261 (76.63%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE----------------------ALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 TLKV NVE PN LKFDFLGKDSI+Y N VEVE V+ AI QF++GK+ DDLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTVSK+HSAQM RL EKIE+LKG+LK+L+ DL R KGKPPL K+SDGK KRNL + ++ +K+A TN KIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPI Sbjct: 507 TLKVENVETKRPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPI 766
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50 Identity = 109/221 (49.32%), Postives = 138/221 (62.44%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDFLGKDSI+Y N V VE VYK + F GK +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++VAI+CNHQR VSK M +L +KI+D K +K+ L K R E ++K +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+ Sbjct: 574 VEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAAL----------------KSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPL 778
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.293e-48 Identity = 109/221 (49.32%), Postives = 141/221 (63.80%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPI Sbjct: 527 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDL-KSAKADAKVMKDAKTKKVVESKKKAVQR----LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPI 742
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 2.994e-48 Identity = 109/221 (49.32%), Postives = 141/221 (63.80%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPI Sbjct: 525 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDL-KSAKADAKVMKDAKTKKVVESKKKAVQR----LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPI 740
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.670e-48 Identity = 109/221 (49.32%), Postives = 140/221 (63.35%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPI Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDL-KSAKADAKVMKDAKTKKVVESKKKAVQR----LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPI 742
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 8.712e-48 Identity = 109/221 (49.32%), Postives = 140/221 (63.35%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPI Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL-KSAKADAKVMKDAKTKKVVESKKKAVQR----LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPI 742
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.712e-48 Identity = 109/221 (49.32%), Postives = 140/221 (63.35%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPI Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL-KSAKADAKVMKDAKTKKVVESKKKAVQR----LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPI 742
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.311e-47 Identity = 110/240 (45.83%), Postives = 141/240 (58.75%), Query Frame = 2 Query: 2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T M L KI+ K + + R +L RA+ DGK + L E R + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+ Sbjct: 342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEH---KAQGDGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPV 576
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.643e-46 Identity = 109/240 (45.42%), Postives = 141/240 (58.75%), Query Frame = 2 Query: 2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T M L KI+ K + + R +L RA+ DGK + L E R + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+ Sbjct: 342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEH---KAQGDGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPV 576 The following BLAST results are available for this feature:
BLAST of FC932651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932651 ID=FC932651; Name=FC932651; organism=Citrus clementina; type=EST; length=703bpback to top |