BQ623150

Overview
NameBQ623150
Unique NameBQ623150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:19..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.614e-55
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +H
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 2.614e-55
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 5.792e-55
Identity = 96/152 (63.16%), Postives = 116/152 (76.32%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E K AVVVGT+TDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G  TVLL GP+  RE  +H
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 5.792e-55
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.283e-54
Identity = 92/152 (60.53%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K  R  PKS DIYL+LLVKLYRFL RR+++ FN+V+L+RLFMS+ N+PP+++SRLI  MK  G+E+KIAVVVGTVTDD+R  ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +H
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 1.283e-54
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.283e-54
Identity = 92/152 (60.53%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K  R  PKS DIYL+LLVKLYRFL RR+++ FN+V+L+RLFMS+ N+PP+++SRLI  MK  G+E+KIAVVVGTVTDD+R  ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +H
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 1.283e-54
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 2.843e-54
Identity = 95/152 (62.50%), Postives = 120/152 (78.95%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+FN+V+LKRLFMS+ N+PPLS+SRLI  MK  G+E+K AVVVG +TDD+R +++P LKV AL+ T   R+RI K+GG+ +TFDQLAL AP GQNTVLL GP+ ARE  +H
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRH 151          

HSP 2 Score: 46.595 bits (109), Expect = 2.843e-54
Identity = 20/24 (83.33%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHS TKPYV SKGRKFE
Sbjct:  152 FGKAPGTPHSRTKPYVLSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.299e-54
Identity = 89/152 (58.55%), Postives = 120/152 (78.95%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +     ++ +RT PKS D+YL+LLVKLYRFL RRT+S FNK+ILKRLFMSK+N+PP+++S+++ FMK   +E ++AV+VGT+ DD R + +P L V ALR T+ AR+RI KAGGE +TFDQLALRAP G+NTVL++G +  REA KH
Sbjct:    1 MGVD-ICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKH 151          

HSP 2 Score: 50.447 bits (119), Expect = 6.299e-54
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSHTK +VRSKGR+FE
Sbjct:  152 FGPAPGVPHSHTKAHVRSKGRQFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.212e-54
Identity = 91/152 (59.87%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT P+S DIYL+LLVK+YRFL RRT+S F+++ILKRLFMS++N PP+SL+R+  FMK   +++ IAVVVGT+TDD R +E+P LKV ALR TE AR RI KAGGE +TF++LA  +P G  TVL++G +NAREAVKH
Sbjct:    1 MGID-INHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKH 151          

HSP 2 Score: 53.9138 bits (128), Expect = 8.212e-54
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSHTKP VRSKGRKFE
Sbjct:  152 FGPAPGVPHSHTKPLVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.978e-52
Identity = 93/152 (61.18%), Postives = 112/152 (73.68%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT PKS D+YL+LLVKLYRFL RRT+  FN++ILKRLFMSK+N+PPLSL R+  F K   + +   VVVGTVTDD R   VP L V AL  T+TAR RI KAGGE LTFDQLALR+P G+NT+LL+G + AR A KH
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKH 151          

HSP 2 Score: 52.7582 bits (125), Expect = 1.978e-52
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APGVPHSHT+PYVRSKGRKFE
Sbjct:  152 FGKAPGVPHSHTRPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.361e-52
Identity = 94/152 (61.84%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+FN+V+LKRLFMS+ N+PPLS+SRLI  MK   +E+K AVVVG +T D+R +++P L V AL+ T  AR+RI KAGG+ +TFDQLAL AP GQNTVLL GP+ ARE  +H
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRH 151          

HSP 2 Score: 44.2838 bits (103), Expect = 3.361e-52
Identity = 19/24 (79.17%), Postives = 19/24 (79.17%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG AP  PHS TKPYV SKGRKFE
Sbjct:  152 FGKAPSTPHSRTKPYVLSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.710e-52
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT  KS D+YL+LLVKLYR+L RRT+S FN +IL+RLFMS++N+PPLSLSRL   MK   +E  IAVVVGT+T+D+R Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+H
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRH 151          

HSP 2 Score: 43.5134 bits (101), Expect = 9.710e-52
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRK 554
            FGPAPG P SHTKPYVR+KG +
Sbjct:  152 FGPAPGAPRSHTKPYVRTKGHE 173          
The following BLAST results are available for this feature:
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_HUMAN2.614e-5563.1660S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]
RL18_BOVIN5.792e-5563.1660S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]
RL18_ORENI1.283e-5460.5360S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO1.283e-5460.5360S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18B_XENLA2.843e-5462.5060S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18_DIACI6.299e-5458.5560S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_LYSTE8.212e-5459.8760S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18_DROME1.978e-5261.1860S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18A_XENLA3.361e-5261.8460S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_SPOFR9.710e-5263.1660S ribosomal protein L18 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00241 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00241 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623150 ID=BQ623150; Name=BQ623150; organism=Citrus sinensis; type=EST; length=607bp
CGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCATGGGTATCGATT
TGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACCGCTCCCAAGTCC
GATGATATCTACCTTAAACTACTCGTCAAGTTGTACCGGTTTCTTGTTCG
AAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGAGGCTGTTTATGA
GTAAAGTCAACAAGCCACCACTTTCACTCTCCAGGCTCATTAACTTCATG
AAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGACAGTCACCGATGA
CATTAGGGCTTACGAGGTGCCGGCATTGAAGGTTACTGCTTTGAGGTTTA
CTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGAGAGTGCTTGACT
TTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAACACGGTCCTTCT
TAGAGGTCCAAAGAATGCCCGTGAGGCAGTGAAGCACCTTTGGTCCAGCT
CCTGGCGTACCACACAGCCACACCAAGCCTTACGTGCGATCAAAGGGAAG
GAAGTTTGAGCGTGCTAGAGGAAGGAGGAACAGCAGGGGTTTCAGAGTTT
AAGTTTA
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