BQ623150

Overview
NameBQ623150
Unique NameBQ623150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:19..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.649e-51
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 2
Query:   71 KKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            +K +RT PKS D+YL+LLVKLYRFL RRT+  FN++ILKRLFMSK+N+PPLSL R+  F K   + +   VVVGTVTDD R   VP L + AL  T+TAR RI KAGGE LTFDQLAL++P G+NT+LL+G + AR A KH
Sbjct:   12 RKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKH 152          

HSP 2 Score: 52.7582 bits (125), Expect = 1.649e-51
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APGVPHSHT+PYVRSKGRKFE
Sbjct:  153 FGKAPGVPHSHTRPYVRSKGRKFE 176          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.803e-51
Identity = 93/152 (61.18%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT  KS D+YL+LLVKLYR+L RRT++ FN+++L+RLFMS++N+PPLSLSRL   MK   +E  IAVVVGT+T+D R Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+H
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRH 151          

HSP 2 Score: 44.669 bits (104), Expect = 2.803e-51
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRK 554
            FGPAPG P SHTKPYVRSKG +
Sbjct:  152 FGPAPGAPRSHTKPYVRSKGHE 173          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.094e-51
Identity = 92/152 (60.53%), Postives = 119/152 (78.29%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT  KS DIYL+LLVKLYR+L RRT++ FN+++L+RLFMS++N+PP+S+SRL   MK   +E  IAVVVGTVT+D+R Y++P + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+H
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRH 151          

HSP 2 Score: 43.5134 bits (101), Expect = 8.094e-51
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRK 554
            FGPAPG P SHTKPYVR+KG +
Sbjct:  152 FGPAPGAPRSHTKPYVRTKGHE 173          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.539e-49
Identity = 93/152 (61.18%), Postives = 115/152 (75.66%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID+    K K  +R  PKS D+YL+L+VKLY+FL RRT S FN ++ +RLFMS++N+ PLSLSRL   MK  G+E KIAVV+GTVT+DIR  EVP L V ALR T  AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +H
Sbjct:    1 MGIDISHRNKRKVVRRN-PKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRH 151          

HSP 2 Score: 41.9726 bits (97), Expect = 2.539e-49
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRK 554
            FGPAPGVP SHTKPYV SK R+
Sbjct:  152 FGPAPGVPGSHTKPYVISKSRE 173          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.113e-48
Identity = 87/153 (56.86%), Postives = 114/153 (74.51%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDK-IAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT PKS D+YL LLVKLYRFL RRT   FNK++++RLFMS+ N PP+SL+R+ + MK  GK++K +AVV+GTVT+D+R  +VP L V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KH
Sbjct:    1 MGID-INHKWDRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKH 152          

HSP 2 Score: 48.1358 bits (113), Expect = 2.113e-48
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APGVPHS+T+PYV+SKGRKFE
Sbjct:  153 FGRAPGVPHSNTRPYVQSKGRKFE 176          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.754e-48
Identity = 97/154 (62.99%), Postives = 114/154 (74.03%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +KS+R+ P S+++YLKLLVKLYRFL RRTDS FNK ILKRLF SK N+PP+S+S++      K    E K  V+VGTVTDD R   VP L V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +H
Sbjct:    1 MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRH 153          

HSP 2 Score: 33.8834 bits (76), Expect = 2.754e-48
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  510 PHSHTKPYVRSKGRKFE 560
            PH H  PYVRS+GRKFE
Sbjct:  158 PHKHKAPYVRSEGRKFE 174          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.755e-48
Identity = 95/152 (62.50%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID  +    +   RTAPKSD++YLKLLVKLY FL RRTD+ FNKV+LK LF+SK+N+PP+S+SR+   +K  G  +K  VVVGTVTDD R +E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+H
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRH 152          

HSP 2 Score: 22.7126 bits (47), Expect = 2.755e-48
Identity = 9/17 (52.94%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  510 PHSHTKPYVRSKGRKFE 560
            PH    P + S GRKFE
Sbjct:  157 PHKGKAPRILSTGRKFE 173          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.590e-48
Identity = 96/154 (62.34%), Postives = 115/154 (74.68%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     KKS+R+ P S+++YLKLLVKLYRFL RRTDS FNK ILKRLF SK N+PP+S+S++      K    ++K  VVVGTVTDD R   VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +H
Sbjct:    1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRH 153          

HSP 2 Score: 33.8834 bits (76), Expect = 3.590e-48
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  510 PHSHTKPYVRSKGRKFE 560
            PH H  PYVRS+GRKFE
Sbjct:  158 PHKHKAPYVRSEGRKFE 174          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.896e-47
Identity = 92/153 (60.13%), Postives = 111/153 (72.55%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GK-EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT PKS D+YL+LLVKLYRFL RRT   FNK+IL+RLFMS+ N+PP+SLSR+   MK  GK E+ IAVVVGTVT+D R    P + V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  H
Sbjct:    1 MGID-INHKWDRKVRRTKPKSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTH 152          

HSP 2 Score: 46.9802 bits (110), Expect = 3.896e-47
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APGVPHS+T+PYV+SKGRK+E
Sbjct:  153 FGRAPGVPHSNTRPYVQSKGRKYE 176          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.841e-42
Identity = 82/140 (58.57%), Postives = 98/140 (70.00%), Query Frame = 2
Query:   71 KKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG-KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            +K+ R    S + Y  LLVKLYRFL RRT+S FNKV+LKRL  +K N+PP+S+SR+ N MK  K  KIAV VGTV DD R  + P L V ALRFTETAR+RI KAGG+ L+FDQ AL  P G NT L++G   ARE  KH
Sbjct:   11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKH 150          

HSP 2 Score: 39.6614 bits (91), Expect = 5.841e-42
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG+P SH +PYVRS+G KF+
Sbjct:  151 FGRAPGLPGSHARPYVRSEGIKFQ 174          
The following BLAST results are available for this feature:
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_DROPS1.649e-5161.7060S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL18_PLUXY2.803e-5161.1860S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_BOMMO8.094e-5160.5360S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]
RL18_TAEAS2.539e-4961.1860S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_ANOGA2.113e-4856.8660S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18B_SCHPO2.754e-4862.9960S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18_YEAST2.755e-4862.5060S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18A_SCHPO3.590e-4862.3460S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_AEDAE3.896e-4760.1360S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_DICDI5.841e-4258.5760S ribosomal protein L18 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00241 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00241 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623150 ID=BQ623150; Name=BQ623150; organism=Citrus sinensis; type=EST; length=607bp
CGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCATGGGTATCGATT
TGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACCGCTCCCAAGTCC
GATGATATCTACCTTAAACTACTCGTCAAGTTGTACCGGTTTCTTGTTCG
AAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGAGGCTGTTTATGA
GTAAAGTCAACAAGCCACCACTTTCACTCTCCAGGCTCATTAACTTCATG
AAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGACAGTCACCGATGA
CATTAGGGCTTACGAGGTGCCGGCATTGAAGGTTACTGCTTTGAGGTTTA
CTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGAGAGTGCTTGACT
TTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAACACGGTCCTTCT
TAGAGGTCCAAAGAATGCCCGTGAGGCAGTGAAGCACCTTTGGTCCAGCT
CCTGGCGTACCACACAGCCACACCAAGCCTTACGTGCGATCAAAGGGAAG
GAAGTTTGAGCGTGCTAGAGGAAGGAGGAACAGCAGGGGTTTCAGAGTTT
AAGTTTA
back to top