BQ623150

Overview
NameBQ623150
Unique NameBQ623150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:19..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.608e-42
Identity = 91/150 (60.67%), Postives = 104/150 (69.33%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGIDLV  G+ KK  R A  S + YL+LLVKLY+FL RRTD +FNKV+LKRL M +  K PLSLS+L   M+ + D  AVVVGTVT+D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKH
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKH 150          

HSP 2 Score: 29.261 bits (64), Expect = 7.608e-42
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  525 KPYVRSKGRKFE 560
            KPYVRSKGRKFE
Sbjct:  160 KPYVRSKGRKFE 171          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.073e-40
Identity = 87/150 (58.00%), Postives = 103/150 (68.67%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGIDLV  G+ KK  R A  S + YL+LLVKL++FL RRTD  FNK++LKRL M +  K PLSLS+L   M+ + +  AVV+GTVT D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKH
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKH 150          

HSP 2 Score: 29.261 bits (64), Expect = 1.073e-40
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  525 KPYVRSKGRKFE 560
            KPYVRSKGRKFE
Sbjct:  160 KPYVRSKGRKFE 171          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.970e-39
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S FNK++ +RL  S+ N+ P+SLSR+   MK        GK+  IAV+VG V DD+R   +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKH
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKH 158          

HSP 2 Score: 26.1794 bits (56), Expect = 1.970e-39
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  498 APGVPHSHTKPYVRSKGRK 554
            A GVP SH KP+  ++G++
Sbjct:  161 AAGVPGSHAKPFTSNRGKE 179          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.292e-39
Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFM--------KGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHLWSSS--WRTTQPHQALRAIKGKE 553
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S FNK+I KRL  S+ N+ P+SLSR+   M        KGK+  IAV+VG V DD+R   +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKH  ++       +PH + R   GKE
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFGAAGVPGSHAKPHVSSR---GKE 179          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.255e-38
Identity = 82/162 (50.62%), Postives = 108/162 (66.67%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHLWSS 499
            MG+DL    K  +  R    S + Y+KLL+KLY+FL +RT S FNKV+ +RL  S+ N+ P+SLSR+   MK         K   IAVVVG V DD+R   +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+H  +S
Sbjct:    1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFGAS 162          

HSP 2 Score: 28.1054 bits (61), Expect = 1.255e-38
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  498 APGVPHSHTKPYVRSKGRK 554
            A GVP SH+KPY  ++G++
Sbjct:  161 ASGVPGSHSKPYATNRGKE 179          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 84/152 (55.26%), Postives = 109/152 (71.71%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID ++    + ++RTAPKS++ YL+LL KLY FL RRT   FN ++LKRL MS+ N+ PLSL+++   +K  G E K  V + TVTDD R YEVP + + AL  TE ARARI  AGGE +T DQLALR+P G+NTV L+GP++AREA KH
Sbjct:    1 MGID-ISHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKH 151          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     + ++RTAPKS++ YL+LL KLY FL RRT   FN ++LKRL MS+ N+ PLSL++L   ++  G E+K  V + TVTDD R Y VP + V AL  TE ARARI  AGGE +T DQLAL++P G+NTV L+GP++AREA KH
Sbjct:    1 MGID-INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKH 151          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALR 346
            MG+D +   K +K +R  PKS DIYL+LLVKL RFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+   MK  G+E K AVVVGT+TDD+R  EVP LKV ALR
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRR-TDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGI ++   K +  +   P S+DI   LLVK+YR    + + + FNKV+L+RLFMS+ ++PP+S+SR+I  MK  G+E++ AVVVGTVTDD+R +E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +H
Sbjct:    1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRH 149          
The following BLAST results are available for this feature:
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_THEPA7.608e-4260.6760S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_THEAN1.073e-4058.0060S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_TRYCR1.970e-3953.1660S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_TRYBB4.292e-3950.0060S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_LEIMA1.255e-3850.6260S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_CAEBR2.130e-3855.2660S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_CAEEL2.355e-3754.6160S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_PIG6.869e-2963.8160S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]
RL18_SALSA3.191e-2647.0660S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00241 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00241 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623150 ID=BQ623150; Name=BQ623150; organism=Citrus sinensis; type=EST; length=607bp
CGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCATGGGTATCGATT
TGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACCGCTCCCAAGTCC
GATGATATCTACCTTAAACTACTCGTCAAGTTGTACCGGTTTCTTGTTCG
AAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGAGGCTGTTTATGA
GTAAAGTCAACAAGCCACCACTTTCACTCTCCAGGCTCATTAACTTCATG
AAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGACAGTCACCGATGA
CATTAGGGCTTACGAGGTGCCGGCATTGAAGGTTACTGCTTTGAGGTTTA
CTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGAGAGTGCTTGACT
TTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAACACGGTCCTTCT
TAGAGGTCCAAAGAATGCCCGTGAGGCAGTGAAGCACCTTTGGTCCAGCT
CCTGGCGTACCACACAGCCACACCAAGCCTTACGTGCGATCAAAGGGAAG
GAAGTTTGAGCGTGCTAGAGGAAGGAGGAACAGCAGGGGTTTCAGAGTTT
AAGTTTA
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