BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.327e-36
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVA ++GVAEATIVDNQI L GP++V+GRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:   69 GDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 141

HSP 2 Score: 41.5874 bits (96), Expect = 1.327e-36
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG+HFNP  +TH
Sbjct:   39 DTTNGCMSTGSHFNPKKLTH 58
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.423e-28
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D+QI LDGPN++VGRA VVH   DDLGKGGHELSLTTGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150

HSP 2 Score: 39.6614 bits (91), Expect = 1.423e-28
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP   TH
Sbjct:   51 DTTNGCMSTGPHFNPEGKTH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.593e-27
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI+   +G A  TI D+QI L GPN++VGRA VVH   DDLGKGGHELSL+TGNAGGR+ACG++GL
Sbjct:   81 GDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGL 150

HSP 2 Score: 38.1206 bits (87), Expect = 2.593e-27
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+STG HFNP+  TH
Sbjct:   51 DNTNGCMSTGPHFNPDGKTH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.721e-27
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G    +I D+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 43.8986 bits (102), Expect = 5.721e-27
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STGAHFNPNN  H
Sbjct:   51 DTTNGCLSTGAHFNPNNNEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.447e-27
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+GGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 38.5058 bits (88), Expect = 7.447e-27
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NPN   H
Sbjct:   51 DTTNGCMSTGPHYNPNGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.695e-27
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D QI L GPN++VGRA VVH   DDLGKGGHELSL TGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150

HSP 2 Score: 40.0466 bits (92), Expect = 9.695e-27
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP+  TH
Sbjct:   51 DTTNGCMSTGPHFNPDGKTH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.784e-26
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 2.784e-26
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.784e-26
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 2.784e-26
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.784e-26
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   81 GDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150

HSP 2 Score: 35.8094 bits (81), Expect = 2.784e-26
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP +  H
Sbjct:   51 DTTNGCMSTGPHYNPASKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.784e-26
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   81 GDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150

HSP 2 Score: 35.8094 bits (81), Expect = 2.784e-26
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP +  H
Sbjct:   51 DTTNGCMSTGPHYNPASKEH 70
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODCP_PINSY1.327e-3686.30Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC1_BRAJU1.423e-2871.43Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC2.593e-2768.57Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_SOYBN5.721e-2762.86Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_SPIOL7.447e-2767.14Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_ARATH9.695e-2768.57Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC1_ORYSJ2.784e-2667.14Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI2.784e-2667.14Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC5_MAIZE2.784e-2665.71Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC4_MAIZE2.784e-2665.71Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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