BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.072e-39
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVANA GVAEATIVD QI L GPN+VVGRAFVVHELEDDLGKGGHELSL+TGNAGGRLACGVVGLTP+
Sbjct:  139 GDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 211

HSP 2 Score: 46.595 bits (109), Expect = 5.072e-39
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPNN+TH
Sbjct:  109 DTTNGCISTGPHFNPNNLTH 128
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.121e-38
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI ANA+GVAE TIVDNQI L GPN+VVGRAFVVHEL+DDLGKGGHELSLTTGNAGGRLACGV+GLTP+
Sbjct:  144 GDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216

HSP 2 Score: 47.7506 bits (112), Expect = 1.121e-38
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPNNMTH
Sbjct:  114 DTTNGCISTGPHFNPNNMTH 133
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.461e-38
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVANA+GVAE T+VDNQI L GPN+VVGRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:  145 GDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 217

HSP 2 Score: 45.0542 bits (105), Expect = 1.461e-38
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STGAHFNPN +TH
Sbjct:  115 DTTNGCMSTGAHFNPNKLTH 134
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.461e-38
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI+ANA GVAEATIVD QI L GPN V+GRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:  140 GDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 212

HSP 2 Score: 46.2098 bits (108), Expect = 1.461e-38
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STGAHFNPN MTH
Sbjct:  110 DTTNGCMSTGAHFNPNGMTH 129
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.906e-38
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI+A+ANGVAEATIVDNQI L GPN+V+GRA VVHELEDDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:  130 GDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202

HSP 2 Score: 44.2838 bits (103), Expect = 1.906e-38
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPN +TH
Sbjct:  100 DTTNGCISTGPHFNPNQLTH 119
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.235e-38
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVANA GVAEATIVDNQI L GPN+VVGRA VVHEL+DDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:  130 GDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202

HSP 2 Score: 44.2838 bits (103), Expect = 3.235e-38
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPN +TH
Sbjct:  100 DTTNGCISTGPHFNPNKLTH 119
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.481e-38
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI+ANA+GVAEATIVDNQI L GPN VVGRAFVVHEL DDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:  148 GDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPV 220

HSP 2 Score: 42.743 bits (99), Expect = 5.481e-38
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPN  TH
Sbjct:  118 DTTNGCISTGPHFNPNGNTH 137
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.143e-38
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI ANA+GVAEAT+VDNQI L GPN+VVGRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:  147 GDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219

HSP 2 Score: 43.1282 bits (100), Expect = 7.143e-38
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNPN +TH
Sbjct:  117 DTTNGCMSTGPHFNPNGLTH 136
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.144e-38
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVAN +G+AEATIVD+QI L G N+VVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV
Sbjct:  144 GDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 216

HSP 2 Score: 45.0542 bits (105), Expect = 7.144e-38
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG+HFNPN +TH
Sbjct:  114 DTTNGCISTGSHFNPNKLTH 133
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.310e-36
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVAN +GVAEATIVDNQI L GPN+VVGRA VVHELEDDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct:  150 GDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLTPV 222

HSP 2 Score: 40.0466 bits (92), Expect = 1.310e-36
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP+  TH
Sbjct:  120 DTTNGCMSTGPHFNPDKKTH 139
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODCP_ORYSJ5.072e-3990.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_ARATH1.121e-3887.67Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_SOLLC1.461e-3889.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_VITVI1.461e-3887.67Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_MEDSA1.906e-3889.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_PEA3.235e-3890.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLCS5.481e-3890.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_PETHY7.143e-3889.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_ZANAE7.144e-3889.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_SPIOL1.310e-3690.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
back to top